Analysis of interatomic Contacts of Structural Units in PDB entry:
5UAS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UAS entry

There are 2 chains in PDB entry 5UAS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 47	PRO 486
B	ARG 48	THR 487

There are 12 helices in PDB entry 5UAS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	84	86	Right-handed 310
Helix 2	AA2	A	109	113	Right-handed 310
Helix 3	AA3	A	146	150	Right-handed 310
Helix 4	AA4	A	272	276	Right-handed 310
Helix 5	AA5	A	310	318	Right-handed alpha
Helix 6	AA6	A	478	485	Right-handed alpha
Helix 7	AA7	B	84	86	Right-handed 310
Helix 8	AA8	B	109	114	Right-handed 310
Helix 9	AA9	B	146	150	Right-handed 310
Helix 10	AB1	B	272	276	Right-handed 310
Helix 11	AB2	B	310	318	Right-handed alpha
Helix 12	AB3	B	478	485	Right-handed alpha

There are 18 sheets in PDB entry 5UAS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	476	477	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	57	first strand
Strand 2	A	463	468	anti-parallel
Strand 3	A	452	457	anti-parallel
Strand 4	A	436	439	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	73	first strand
Strand 2	A	76	82	anti-parallel
Strand 3	A	88	94	anti-parallel
Strand 4	A	100	105	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	130	first strand
Strand 2	A	136	140	anti-parallel
Strand 3	A	163	169	anti-parallel
Strand 4	A	172	178	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	193	first strand
Strand 2	A	199	204	anti-parallel
Strand 3	A	212	217	anti-parallel
Strand 4	A	228	231	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	235	first strand
Strand 2	A	241	251	anti-parallel
Strand 3	A	256	267	anti-parallel
Strand 4	A	282	291	anti-parallel
Strand 5	A	297	298	anti-parallel
Strand 6	A	304	305	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	235	first strand
Strand 2	A	241	251	anti-parallel
Strand 3	A	256	267	anti-parallel
Strand 4	A	282	291	anti-parallel
Strand 5	A	319	321	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	335	first strand
Strand 2	A	341	348	anti-parallel
Strand 3	A	360	366	anti-parallel
Strand 4	A	371	376	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	391	first strand
Strand 2	A	397	405	anti-parallel
Strand 3	A	408	416	anti-parallel
Strand 4	A	424	432	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	476	477	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	463	468	anti-parallel
Strand 3	B	452	457	anti-parallel
Strand 4	B	436	439	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	73	first strand
Strand 2	B	76	82	anti-parallel
Strand 3	B	88	94	anti-parallel
Strand 4	B	99	105	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	136	140	anti-parallel
Strand 3	B	163	169	anti-parallel
Strand 4	B	172	178	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	193	first strand
Strand 2	B	199	204	anti-parallel
Strand 3	B	212	217	anti-parallel
Strand 4	B	228	231	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	235	first strand
Strand 2	B	241	251	anti-parallel
Strand 3	B	256	267	anti-parallel
Strand 4	B	282	291	anti-parallel
Strand 5	B	297	298	anti-parallel
Strand 6	B	304	305	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	235	first strand
Strand 2	B	241	251	anti-parallel
Strand 3	B	256	267	anti-parallel
Strand 4	B	282	291	anti-parallel
Strand 5	B	319	321	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	335	first strand
Strand 2	B	341	348	anti-parallel
Strand 3	B	360	366	anti-parallel
Strand 4	B	371	376	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	391	first strand
Strand 2	B	397	405	anti-parallel
Strand 3	B	408	416	anti-parallel
Strand 4	B	424	432	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UAS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UAS