Analysis of interatomic Contacts of Structural Units in PDB entry:
5UB3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UB3 entry

There are 2 chains in PDB entry 5UB3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 31VAL 308
B
 SER 31GLU 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5UB3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 58Right-handed alpha
Helix 2
AA2
A
59 65Right-handed 310
Helix 3
AA3
A
76 86Right-handed alpha
Helix 4
AA4
A
96 105Right-handed alpha
Helix 5
AA5
A
136 141Right-handed 310
Helix 6
AA6
A
156 166Right-handed alpha
Helix 7
AA7
A
192 202Right-handed alpha
Helix 8
AA8
A
212 216Right-handed alpha
Helix 9
AA9
A
222 227Right-handed alpha
Helix 10
AB1
A
250 265Right-handed alpha
Helix 11
AB2
A
266 269Right-handed 310
Helix 12
AB3
A
270 277Right-handed alpha
Helix 13
AB4
A
287 307Right-handed alpha
Helix 14
AB5
B
42 58Right-handed alpha
Helix 15
AB6
B
59 65Right-handed 310
Helix 16
AB7
B
76 86Right-handed alpha
Helix 17
AB8
B
96 105Right-handed alpha
Helix 18
AB9
B
136 141Right-handed 310
Helix 19
AC1
B
156 166Right-handed alpha
Helix 20
AC2
B
192 202Right-handed alpha
Helix 21
AC3
B
212 216Right-handed alpha
Helix 22
AC4
B
222 227Right-handed alpha
Helix 23
AC5
B
250 267Right-handed alpha
Helix 24
AC6
B
270 277Right-handed alpha
Helix 25
AC7
B
287 309Right-handed alpha
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There are 6 sheets in PDB entry 5UB3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 71first strand
Strand 2
A
33 37parallel
Strand 3
A
91 95parallel
Strand 4
A
241 246anti-parallel
Strand 5
A
108 116anti-parallel
Strand 6
A
280 284anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
238 239anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 172first strand
Strand 2
A
185 189parallel
Strand 3
A
144 147parallel
Strand 4
A
207 211parallel
Strand 5
A
124 129anti-parallel
Strand 6
A
229 234anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 71first strand
Strand 2
B
33 37parallel
Strand 3
B
91 95parallel
Strand 4
B
241 246anti-parallel
Strand 5
B
108 116anti-parallel
Strand 6
B
280 284anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 122first strand
Strand 2
B
238 239anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 172first strand
Strand 2
B
185 189parallel
Strand 3
B
144 147parallel
Strand 4
B
207 211parallel
Strand 5
B
124 129anti-parallel
Strand 6
B
229 234anti-parallel
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