Analysis of interatomic Contacts of Structural Units in PDB entry:
5UB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UB8 entry

There is 1 chain in PDB entry 5UB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 8GLU 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5UB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 37Right-handed alpha
Helix 2
AA2
A
73 77Right-handed 310
Helix 3
AA3
A
81 86Right-handed alpha
Helix 4
AA4
A
99 105Right-handed alpha
Helix 5
AA5
A
105 117Right-handed alpha
Helix 6
AA6
A
132 136Right-handed 310
Helix 7
AA7
A
139 150Right-handed alpha
Helix 8
AA8
A
164 185Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5UB8.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 59first strand
Strand 2
A
62 69anti-parallel
Strand 3
A
13 22parallel
Strand 4
A
90 96parallel
Strand 5
A
122 128parallel
Strand 6
A
153 156parallel
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