Analysis of interatomic Contacts of Structural Units in PDB entry:
5UB9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UB9 entry

There are 2 chains in PDB entry 5UB9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5GLU 225
B
 THR 5GLY 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5UB9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 28Right-handed alpha
Helix 2
AA2
A
54 56Right-handed 310
Helix 3
AA3
A
57 64Right-handed alpha
Helix 4
AA4
A
74 87Right-handed alpha
Helix 5
AA5
A
118 123Right-handed 310
Helix 6
AA6
A
131 142Right-handed alpha
Helix 7
AA7
A
154 158Right-handed 310
Helix 8
AA8
A
177 180Right-handed 310
Helix 9
AA9
A
203 224Right-handed alpha
Helix 10
AB1
B
17 28Right-handed alpha
Helix 11
AB2
B
54 56Right-handed 310
Helix 12
AB3
B
57 64Right-handed alpha
Helix 13
AB4
B
74 87Right-handed alpha
Helix 14
AB5
B
118 123Right-handed 310
Helix 15
AB6
B
131 143Right-handed alpha
Helix 16
AB7
B
154 158Right-handed 310
Helix 17
AB8
B
174 180Right-handed alpha
Helix 18
AB9
B
203 219Right-handed alpha
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There are 4 sheets in PDB entry 5UB9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
40 43anti-parallel
Strand 3
A
48 53anti-parallel
Strand 4
A
7 12parallel
Strand 5
A
69 73parallel
Strand 6
A
193 197anti-parallel
Strand 7
A
94 98anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
126 129parallel
Strand 3
A
166 172parallel
Strand 4
A
104 111anti-parallel
Strand 5
A
182 191anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 42first strand
Strand 2
B
48 53anti-parallel
Strand 3
B
7 12parallel
Strand 4
B
69 73parallel
Strand 5
B
193 198anti-parallel
Strand 6
B
93 98anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 150first strand
Strand 2
B
126 129parallel
Strand 3
B
166 171parallel
Strand 4
B
104 111anti-parallel
Strand 5
B
182 191anti-parallel
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