Analysis of interatomic Contacts of Structural Units in PDB entry:
5UBA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UBA entry

There is 1 chain in PDB entry 5UBA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 84ASN 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5UBA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 98Right-handed alpha
Helix 2
AA2
A
126 140Right-handed alpha
Helix 3
AA3
A
165 178Right-handed alpha
Helix 4
AA4
A
269 280Right-handed alpha
Helix 5
AA5
A
301 309Right-handed alpha
Helix 6
AA6
A
311 318Right-handed 310
Helix 7
AA7
A
346 356Right-handed alpha
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There are 4 sheets in PDB entry 5UBA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
106 111anti-parallel
Strand 3
A
156 163anti-parallel
Strand 4
A
322 329parallel
Strand 5
A
182 190anti-parallel
Strand 6
A
256 263anti-parallel
Strand 7
A
245 252anti-parallel
Strand 8
A
197 200anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
156 163anti-parallel
Strand 3
A
322 329parallel
Strand 4
A
339 342anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
219 220anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
230 233anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il