Analysis of interatomic Contacts of Structural Units in PDB entry:
5UBB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UBB entry

There is 1 chain in PDB entry 5UBB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 59HIS 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5UBB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 77Right-handed alpha
Helix 2
AA2
A
82 88Right-handed alpha
Helix 3
AA3
A
90 92Right-handed 310
Helix 4
AA4
A
93 107Right-handed alpha
Helix 5
AA5
A
128 134Right-handed alpha
Helix 6
AA6
A
148 159Right-handed alpha
Helix 7
AA7
A
173 177Right-handed 310
Helix 8
AA8
A
192 196Right-handed 310
Helix 9
AA9
A
197 211Right-handed alpha
Helix 10
AB1
A
241 252Right-handed alpha
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There are 2 sheets in PDB entry 5UBB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
141 146parallel
Strand 3
A
119 123parallel
Strand 4
A
184 190parallel
Strand 5
A
212 223parallel
Strand 6
A
272 277anti-parallel
Strand 7
A
256 261anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
A
237 239anti-parallel
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