Analysis of interatomic Contacts of Structural Units in PDB entry:
5UBC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UBC entry

There are 2 chains in PDB entry 5UBC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 150GLU 449
B
 SER 150GLU 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5UBC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
192 196Right-handed 310
Helix 2
AA2
A
205 219Right-handed alpha
Helix 3
AA3
A
275 297Right-handed alpha
Helix 4
AA4
A
303 318Right-handed alpha
Helix 5
AA5
A
321 339Right-handed alpha
Helix 6
AA6
A
383 385Right-handed 310
Helix 7
AA7
A
386 392Right-handed alpha
Helix 8
AA8
A
393 394Right-handed 310
Helix 9
AA9
A
395 399Right-handed 310
Helix 10
AB1
A
405 418Right-handed alpha
Helix 11
AB2
B
192 196Right-handed 310
Helix 12
AB3
B
205 219Right-handed alpha
Helix 13
AB4
B
276 297Right-handed alpha
Helix 14
AB5
B
303 318Right-handed alpha
Helix 15
AB6
B
321 339Right-handed alpha
Helix 16
AB7
B
386 392Right-handed alpha
Helix 17
AB8
B
393 394Right-handed 310
Helix 18
AB9
B
395 399Right-handed 310
Helix 19
AC1
B
405 418Right-handed alpha
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There are 8 sheets in PDB entry 5UBC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
203 204anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
175 179anti-parallel
Strand 3
A
237 245parallel
Strand 4
A
222 231anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 258first strand
Strand 2
A
356 362parallel
Strand 3
A
345 350anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 381first strand
Strand 2
A
366 374anti-parallel
Strand 3
A
439 447parallel
Strand 4
A
422 431anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 172first strand
Strand 2
B
202 204anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 185first strand
Strand 2
B
175 179anti-parallel
Strand 3
B
237 245parallel
Strand 4
B
222 231anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 258first strand
Strand 2
B
356 362parallel
Strand 3
B
345 350anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 374first strand
Strand 2
B
439 447parallel
Strand 3
B
422 431anti-parallel
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