Analysis of interatomic Contacts of Structural Units in PDB entry:
5UBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UBF entry

There are 2 chains in PDB entry 5UBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 182TYR 472
B
 ALA 182TYR 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5UBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
184 189Right-handed 310
Helix 2
AA2
A
222 224Right-handed 310
Helix 3
AA3
A
225 240Right-handed alpha
Helix 4
AA4
A
262 270Right-handed alpha
Helix 5
AA5
A
274 290Right-handed alpha
Helix 6
AA6
A
350 359Right-handed alpha
Helix 7
AA7
A
369 373Right-handed 310
Helix 8
AA8
A
374 387Right-handed alpha
Helix 9
AA9
A
398 406Right-handed alpha
Helix 10
AB1
A
410 425Right-handed alpha
Helix 11
AB2
A
464 471Right-handed alpha
Helix 12
AB3
B
184 188Right-handed 310
Helix 13
AB4
B
224 240Right-handed alpha
Helix 14
AB5
B
262 269Right-handed alpha
Helix 15
AB6
B
274 290Right-handed alpha
Helix 16
AB7
B
333 337Right-handed 310
Helix 17
AB8
B
350 358Right-handed alpha
Helix 18
AB9
B
369 373Right-handed 310
Helix 19
AC1
B
374 387Right-handed alpha
Helix 20
AC2
B
398 405Right-handed alpha
Helix 21
AC3
B
410 425Right-handed alpha
Helix 22
AC4
B
464 471Right-handed alpha
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There are 5 sheets in PDB entry 5UBF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 205first strand
Strand 2
A
208 215anti-parallel
Strand 3
A
292 297anti-parallel
Strand 4
A
311 316anti-parallel
Strand 5
B
319 326anti-parallel
Strand 6
B
342 349anti-parallel
Strand 7
B
258 261anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 261first strand
Strand 2
A
342 349anti-parallel
Strand 3
A
319 326anti-parallel
Strand 4
B
311 316anti-parallel
Strand 5
B
291 297anti-parallel
Strand 6
B
208 216anti-parallel
Strand 7
B
198 205anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 332first strand
Strand 2
A
338 339anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 397first strand
Strand 2
A
456 463anti-parallel
Strand 3
A
442 449anti-parallel
Strand 4
A
434 437anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
393 397first strand
Strand 2
B
455 463anti-parallel
Strand 3
B
442 450anti-parallel
Strand 4
B
434 437anti-parallel
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