Analysis of interatomic Contacts of Structural Units in PDB entry:
5UBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UBJ entry

There is 1 chain in PDB entry 5UBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 23LYS 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5UBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
83 90Right-handed 310
Helix 2
AA2
A
108 111Right-handed 310
Helix 3
AA3
A
187 189Right-handed 310
Helix 4
AA4
A
293 296Right-handed 310
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There are 5 sheets in PDB entry 5UBJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
318 324anti-parallel
Strand 3
A
298 303anti-parallel
Strand 4
A
277 281anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 56first strand
Strand 2
A
59 68anti-parallel
Strand 3
A
73 78anti-parallel
Strand 4
A
92 94anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 107first strand
Strand 2
A
112 118anti-parallel
Strand 3
A
124 129anti-parallel
Strand 4
A
142 145anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 163first strand
Strand 2
A
167 173anti-parallel
Strand 3
A
178 185anti-parallel
Strand 4
A
198 202anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
237 244anti-parallel
Strand 3
A
225 232anti-parallel
Strand 4
A
210 217anti-parallel
Strand 5
A
291 292parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il