Analysis of interatomic Contacts of Structural Units in PDB entry:
5UBK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UBK entry

There is 1 chain in PDB entry 5UBK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLU 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5UBK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
152 155Right-handed 310
Helix 2
AA2
A
157 167Right-handed alpha
Helix 3
AA3
A
170 182Right-handed alpha
Helix 4
AA4
A
210 212Right-handed 310
Helix 5
AA5
A
213 218Right-handed alpha
Helix 6
AA6
A
219 225Right-handed alpha
Helix 7
AA7
A
234 238Right-handed 310
Helix 8
AA8
A
252 256Right-handed 310
Helix 9
AA9
A
271 275Right-handed 310
Helix 10
AB1
A
295 306Right-handed alpha
Helix 11
AB2
A
312 322Right-handed alpha
Helix 12
AB3
A
327 342Right-handed alpha
Helix 13
AB4
A
345 347Right-handed 310
Helix 14
AB5
A
348 358Right-handed alpha
Helix 15
AB6
A
368 381Right-handed alpha
Helix 16
AB7
A
407 427Right-handed alpha
Helix 17
AB8
A
435 439Right-handed alpha
Helix 18
AB9
A
455 459Right-handed 310
Helix 19
AC1
A
512 520Right-handed alpha
Helix 20
AC2
A
529 535Right-handed alpha
Helix 21
AC3
A
565 567Right-handed 310
Helix 22
AC4
A
575 604Right-handed alpha
Helix 23
AC5
A
605 611Right-handed alpha
Helix 24
AC6
A
621 633Right-handed alpha
Helix 25
AC7
A
634 644Right-handed alpha
Helix 26
AC8
A
646 667Right-handed alpha
Helix 27
AC9
A
684 697Right-handed alpha
Helix 28
AD1
A
698 703Right-handed 310
Helix 29
AD2
A
704 711Right-handed alpha
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There are 8 sheets in PDB entry 5UBK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
17 21anti-parallel
Strand 4
A
481 486anti-parallel
Strand 5
A
493 498anti-parallel
Strand 6
A
524 525anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 25first strand
Strand 2
A
472 479anti-parallel
Strand 3
A
440 444parallel
Strand 4
A
447 450anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 25first strand
Strand 2
A
472 479anti-parallel
Strand 3
A
464 469anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 261first strand
Strand 2
A
198 201anti-parallel
Strand 3
A
187 193anti-parallel
Strand 4
A
64 70anti-parallel
Strand 5
A
58 60anti-parallel
Strand 6
A
43 49anti-parallel
Strand 7
A
33 39anti-parallel
Strand 8
A
569 572parallel
Strand 9
A
558 563anti-parallel
Strand 10
A
540 545anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
87 93anti-parallel
Strand 3
A
76 84anti-parallel
Strand 4
A
144 150anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
87 93anti-parallel
Strand 3
A
76 84anti-parallel
Strand 4
A
229 231parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 110first strand
Strand 2
A
116 125anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 389first strand
Strand 2
A
401 403anti-parallel
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