Analysis of interatomic Contacts of Structural Units in PDB entry:
5UBL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UBL entry

There is 1 chain in PDB entry 5UBL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LYS 718
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5UBL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 31Right-handed 310
Helix 2
AA2
A
152 155Right-handed 310
Helix 3
AA3
A
157 167Right-handed alpha
Helix 4
AA4
A
170 182Right-handed alpha
Helix 5
AA5
A
212 218Right-handed alpha
Helix 6
AA6
A
219 226Right-handed alpha
Helix 7
AA7
A
234 238Right-handed 310
Helix 8
AA8
A
252 256Right-handed 310
Helix 9
AA9
A
295 306Right-handed alpha
Helix 10
AB1
A
312 322Right-handed alpha
Helix 11
AB2
A
327 342Right-handed alpha
Helix 12
AB3
A
345 347Right-handed 310
Helix 13
AB4
A
348 358Right-handed alpha
Helix 14
AB5
A
368 381Right-handed alpha
Helix 15
AB6
A
407 428Right-handed alpha
Helix 16
AB7
A
435 439Right-handed alpha
Helix 17
AB8
A
455 459Right-handed 310
Helix 18
AB9
A
512 521Right-handed alpha
Helix 19
AC1
A
529 535Right-handed alpha
Helix 20
AC2
A
565 567Right-handed 310
Helix 21
AC3
A
575 603Right-handed alpha
Helix 22
AC4
A
605 611Right-handed alpha
Helix 23
AC5
A
621 633Right-handed alpha
Helix 24
AC6
A
634 644Right-handed alpha
Helix 25
AC7
A
646 667Right-handed alpha
Helix 26
AC8
A
684 697Right-handed alpha
Helix 27
AC9
A
698 703Right-handed 310
Helix 28
AD1
A
704 710Right-handed alpha
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There are 8 sheets in PDB entry 5UBL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
17 21anti-parallel
Strand 4
A
481 486anti-parallel
Strand 5
A
493 498anti-parallel
Strand 6
A
524 525anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 25first strand
Strand 2
A
472 479anti-parallel
Strand 3
A
440 444parallel
Strand 4
A
447 450anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 25first strand
Strand 2
A
472 479anti-parallel
Strand 3
A
464 469anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 261first strand
Strand 2
A
198 201anti-parallel
Strand 3
A
187 193anti-parallel
Strand 4
A
64 70anti-parallel
Strand 5
A
58 61anti-parallel
Strand 6
A
43 49anti-parallel
Strand 7
A
33 39anti-parallel
Strand 8
A
568 572parallel
Strand 9
A
558 564anti-parallel
Strand 10
A
540 545anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
87 93anti-parallel
Strand 3
A
76 84anti-parallel
Strand 4
A
144 150anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
87 93anti-parallel
Strand 3
A
76 84anti-parallel
Strand 4
A
229 231parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 110first strand
Strand 2
A
116 126anti-parallel
Strand 3
A
129 130anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 389first strand
Strand 2
A
401 403anti-parallel
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