Analysis of interatomic Contacts of Structural Units in PDB entry:
5UBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UBP entry

There are 2 chains in PDB entry 5UBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 79GLY 547
B
 MET 1PHE 141
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5UBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 97Right-handed alpha
Helix 2
AA2
A
102 107Right-handed 310
Helix 3
AA3
A
119 123Right-handed 310
Helix 4
AA4
A
137 154Right-handed alpha
Helix 5
AA5
A
156 178Right-handed alpha
Helix 6
AA6
A
205 216Right-handed alpha
Helix 7
AA7
A
219 223Right-handed 310
Helix 8
AA8
A
251 255Right-handed 310
Helix 9
AA9
A
257 272Right-handed alpha
Helix 10
AB1
A
273 276Right-handed 310
Helix 11
AB2
A
279 297Right-handed alpha
Helix 12
AB3
A
301 326Right-handed alpha
Helix 13
AB4
A
330 355Right-handed alpha
Helix 14
AB5
A
361 373Right-handed alpha
Helix 15
AB6
A
376 385Right-handed alpha
Helix 16
AB7
A
387 392Right-handed alpha
Helix 17
AB8
A
393 407Right-handed alpha
Helix 18
AB9
A
425 434Right-handed alpha
Helix 19
AC1
A
439 447Right-handed alpha
Helix 20
AC2
A
449 465Right-handed alpha
Helix 21
AC3
A
474 482Right-handed alpha
Helix 22
AC4
A
485 496Right-handed alpha
Helix 23
AC5
A
508 511Right-handed 310
Helix 24
AC6
A
529 537Right-handed alpha
Helix 25
AC7
A
540 546Right-handed alpha
Helix 26
AC8
B
2 13Right-handed alpha
Helix 27
AC9
B
22 38Right-handed alpha
Helix 28
AD1
B
41 52Right-handed alpha
Helix 29
AD2
B
58 75Right-handed alpha
Helix 30
AD3
B
79 97Right-handed alpha
Helix 31
AD4
B
105 129Right-handed alpha
Helix 32
AD5
B
130 135Right-handed alpha
Helix 33
AD6
B
139 156Right-handed alpha
Helix 34
AD7
B
169 174Right-handed alpha
Helix 35
AD8
B
174 189Right-handed alpha
Helix 36
AD9
B
191 193Right-handed 310
Helix 37
AE1
B
194 206Right-handed alpha
Helix 38
AE2
B
210 214Right-handed 310
Helix 39
AE3
B
215 233Right-handed alpha
Helix 40
AE4
B
235 252Right-handed alpha
Helix 41
AE5
B
257 278Right-handed alpha
Helix 42
AE6
B
284 291Right-handed 310
Helix 43
AE7
B
292 309Right-handed alpha
Helix 44
AE8
B
310 321Right-handed alpha
Helix 45
AE9
B
321 328Right-handed alpha
Helix 46
AF1
B
330 355Right-handed alpha
Helix 47
AF2
B
365 377Right-handed alpha
Helix 48
AF3
B
399 410Right-handed alpha
Helix 49
AF4
B
431 436Right-handed alpha
Helix 50
AF5
B
438 447Right-handed alpha
Helix 51
AF6
C
28 32Right-handed alpha
Helix 52
AF7
C
71 88Right-handed alpha
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There are 2 sheets in PDB entry 5UBP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 473first strand
Strand 2
A
505 507anti-parallel
Strand 3
A
499 501anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
362 364first strand
Strand 2
B
423 425anti-parallel
Strand 3
B
416 418anti-parallel
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