Analysis of interatomic Contacts of Structural Units in PDB entry:
5UBU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UBU entry

There are 4 chains in PDB entry 5UBU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 0	GLN 329
B	ASN -1	GLN 329
C	ALA 0	GLN 329
D	MSE 1	TYR 297

There are 28 helices in PDB entry 5UBU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	6	Right-handed 310
Helix 2	AA2	A	7	13	Right-handed alpha
Helix 3	AA3	A	26	31	Right-handed alpha
Helix 4	AA4	A	71	76	Right-handed alpha
Helix 5	AA5	A	269	289	Right-handed alpha
Helix 6	AA6	A	292	304	Right-handed alpha
Helix 7	AA7	A	325	328	Right-handed 310
Helix 8	AA8	B	-1	6	Right-handed 310
Helix 9	AA9	B	7	13	Right-handed alpha
Helix 10	AB1	B	26	31	Right-handed alpha
Helix 11	AB2	B	71	76	Right-handed alpha
Helix 12	AB3	B	269	289	Right-handed alpha
Helix 13	AB4	B	292	304	Right-handed alpha
Helix 14	AB5	B	325	328	Right-handed 310
Helix 15	AB6	C	1	6	Right-handed 310
Helix 16	AB7	C	7	13	Right-handed alpha
Helix 17	AB8	C	26	31	Right-handed alpha
Helix 18	AB9	C	71	76	Right-handed alpha
Helix 19	AC1	C	269	289	Right-handed alpha
Helix 20	AC2	C	292	304	Right-handed alpha
Helix 21	AC3	C	325	328	Right-handed 310
Helix 22	AC4	D	1	6	Right-handed 310
Helix 23	AC5	D	7	13	Right-handed alpha
Helix 24	AC6	D	26	31	Right-handed alpha
Helix 25	AC7	D	71	76	Right-handed alpha
Helix 26	AC8	D	269	289	Right-handed alpha
Helix 27	AC9	D	292	304	Right-handed alpha
Helix 28	AD1	D	325	328	Right-handed 310

There are 20 sheets in PDB entry 5UBU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	25	first strand
Strand 2	A	52	56	parallel
Strand 3	A	236	245	anti-parallel
Strand 4	A	98	108	anti-parallel
Strand 5	A	200	205	anti-parallel
Strand 6	A	254	257	anti-parallel
Strand 7	A	260	267	anti-parallel
Strand 8	A	316	323	anti-parallel
Strand 9	A	305	310	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	37	first strand
Strand 2	A	179	180	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	85	90	parallel
Strand 3	A	211	219	anti-parallel
Strand 4	A	166	172	anti-parallel
Strand 5	A	188	190	anti-parallel
Strand 6	A	184	185	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	85	90	parallel
Strand 3	A	211	219	anti-parallel
Strand 4	A	233	234	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	119	first strand
Strand 2	A	142	148	anti-parallel
Strand 3	A	152	154	anti-parallel
Strand 4	A	161	162	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	25	first strand
Strand 2	B	52	56	parallel
Strand 3	B	236	245	anti-parallel
Strand 4	B	98	108	anti-parallel
Strand 5	B	200	205	anti-parallel
Strand 6	B	254	257	anti-parallel
Strand 7	B	260	267	anti-parallel
Strand 8	B	316	323	anti-parallel
Strand 9	B	305	310	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	37	first strand
Strand 2	B	179	180	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	84	90	parallel
Strand 3	B	211	219	anti-parallel
Strand 4	B	166	172	anti-parallel
Strand 5	B	188	190	anti-parallel
Strand 6	B	184	185	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	84	90	parallel
Strand 3	B	211	219	anti-parallel
Strand 4	B	233	234	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	119	first strand
Strand 2	B	142	148	anti-parallel
Strand 3	B	152	154	anti-parallel
Strand 4	B	161	162	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	25	first strand
Strand 2	C	52	56	parallel
Strand 3	C	236	245	anti-parallel
Strand 4	C	98	108	anti-parallel
Strand 5	C	200	205	anti-parallel
Strand 6	C	254	257	anti-parallel
Strand 7	C	260	267	anti-parallel
Strand 8	C	316	323	anti-parallel
Strand 9	C	305	310	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	37	first strand
Strand 2	C	179	180	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	84	90	parallel
Strand 3	C	211	219	anti-parallel
Strand 4	C	166	172	anti-parallel
Strand 5	C	188	190	anti-parallel
Strand 6	C	184	185	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	84	90	parallel
Strand 3	C	211	219	anti-parallel
Strand 4	C	233	234	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	119	first strand
Strand 2	C	142	148	anti-parallel
Strand 3	C	152	154	anti-parallel
Strand 4	C	161	162	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	25	first strand
Strand 2	D	52	56	parallel
Strand 3	D	236	245	anti-parallel
Strand 4	D	98	108	anti-parallel
Strand 5	D	200	205	anti-parallel
Strand 6	D	254	257	anti-parallel
Strand 7	D	260	267	anti-parallel
Strand 8	D	316	323	anti-parallel
Strand 9	D	305	310	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	37	first strand
Strand 2	D	179	180	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	85	90	parallel
Strand 3	D	211	219	anti-parallel
Strand 4	D	166	172	anti-parallel
Strand 5	D	188	190	anti-parallel
Strand 6	D	184	185	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	85	90	parallel
Strand 3	D	211	219	anti-parallel
Strand 4	D	233	234	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	119	first strand
Strand 2	D	142	148	anti-parallel
Strand 3	D	152	154	anti-parallel
Strand 4	D	161	162	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UBU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UBU