Analysis of interatomic Contacts of Structural Units in PDB entry:
5UBW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UBW entry

There are 2 chains in PDB entry 5UBW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -3LEU 339
B
 PRO -3LEU 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5UBW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-3 158Right-handed 310
Helix 2
AA2
A
161 170Right-handed alpha
Helix 3
AA3
A
195 206Right-handed alpha
Helix 4
AA4
A
248 263Right-handed alpha
Helix 5
AA5
A
284 300Right-handed alpha
Helix 6
AA6
A
303 317Right-handed alpha
Helix 7
AA7
A
319 338Right-handed alpha
Helix 8
AA8
B
-3 158Right-handed 310
Helix 9
AA9
B
161 170Right-handed alpha
Helix 10
AB1
B
195 206Right-handed alpha
Helix 11
AB2
B
248 263Right-handed alpha
Helix 12
AB3
B
284 297Right-handed alpha
Helix 13
AB4
B
306 317Right-handed alpha
Helix 14
AB5
B
322 338Right-handed alpha
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There are 3 sheets in PDB entry 5UBW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
213 219parallel
Strand 3
A
224 231anti-parallel
Strand 4
A
236 242anti-parallel
Strand 5
A
271 274parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 181first strand
Strand 2
B
213 219parallel
Strand 3
B
185 186parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 181first strand
Strand 2
B
213 219parallel
Strand 3
B
224 230anti-parallel
Strand 4
B
237 242anti-parallel
Strand 5
B
271 274parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il