Analysis of interatomic Contacts of Structural Units in PDB entry:
5UBX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UBX entry

There are 3 chains in PDB entry 5UBX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 241	SER 442
B	PRO 238	SER 444
Z	PHE 1	CYS 34

There are 12 helices in PDB entry 5UBX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	246	252	Right-handed alpha
Helix 2	AA2	A	309	315	Right-handed alpha
Helix 3	AA3	A	354	358	Right-handed 310
Helix 4	AA4	A	414	420	Right-handed alpha
Helix 5	AA5	A	432	436	Right-handed 310
Helix 6	AA6	B	246	252	Right-handed alpha
Helix 7	AA7	B	309	315	Right-handed alpha
Helix 8	AA8	B	354	358	Right-handed 310
Helix 9	AA9	B	414	420	Right-handed alpha
Helix 10	AB1	B	432	436	Right-handed 310
Helix 11	AB2	Z	2	14	Right-handed alpha
Helix 12	AB3	Z	19	34	Right-handed alpha

There are 10 sheets in PDB entry 5UBX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	243	first strand
Strand 2	A	258	263	anti-parallel
Strand 3	A	301	307	anti-parallel
Strand 4	A	288	292	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	284	first strand
Strand 2	A	274	279	anti-parallel
Strand 3	A	319	324	anti-parallel
Strand 4	A	332	334	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	351	first strand
Strand 2	A	362	372	anti-parallel
Strand 3	A	404	413	anti-parallel
Strand 4	A	391	393	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	351	first strand
Strand 2	A	362	372	anti-parallel
Strand 3	A	404	413	anti-parallel
Strand 4	A	397	398	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	388	first strand
Strand 2	A	378	383	anti-parallel
Strand 3	A	423	428	anti-parallel
Strand 4	A	437	441	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	243	first strand
Strand 2	B	258	266	anti-parallel
Strand 3	B	299	307	anti-parallel
Strand 4	B	288	294	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	284	first strand
Strand 2	B	275	279	anti-parallel
Strand 3	B	319	323	anti-parallel
Strand 4	B	332	336	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	362	372	anti-parallel
Strand 3	B	404	413	anti-parallel
Strand 4	B	391	393	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	362	372	anti-parallel
Strand 3	B	404	413	anti-parallel
Strand 4	B	397	398	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	388	first strand
Strand 2	B	378	383	anti-parallel
Strand 3	B	423	428	anti-parallel
Strand 4	B	437	441	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UBX

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UBX