Analysis of interatomic Contacts of Structural Units in PDB entry:
5UC1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UC1 entry

There are 2 chains in PDB entry 5UC1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 520THR 726
B
 THR 520THR 726
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5UC1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
527 535Right-handed alpha
Helix 2
AA2
A
551 575Right-handed alpha
Helix 3
AA3
A
579 583Right-handed 310
Helix 4
AA4
A
584 594Right-handed alpha
Helix 5
AA5
A
595 611Right-handed alpha
Helix 6
AA6
A
626 631Right-handed alpha
Helix 7
AA7
A
634 640Right-handed alpha
Helix 8
AA8
A
642 653Right-handed alpha
Helix 9
AA9
A
655 668Right-handed alpha
Helix 10
AB1
A
672 676Right-handed 310
Helix 11
AB2
A
678 702Right-handed alpha
Helix 12
AB3
A
706 721Right-handed alpha
Helix 13
AB4
B
527 535Right-handed alpha
Helix 14
AB5
B
551 575Right-handed alpha
Helix 15
AB6
B
579 583Right-handed 310
Helix 16
AB7
B
584 594Right-handed alpha
Helix 17
AB8
B
595 611Right-handed alpha
Helix 18
AB9
B
626 631Right-handed alpha
Helix 19
AC1
B
634 640Right-handed alpha
Helix 20
AC2
B
642 653Right-handed alpha
Helix 21
AC3
B
655 669Right-handed alpha
Helix 22
AC4
B
672 676Right-handed 310
Helix 23
AC5
B
678 702Right-handed alpha
Helix 24
AC6
B
705 722Right-handed alpha
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There are 2 sheets in PDB entry 5UC1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
617 620first strand
Strand 2
A
623 625anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
617 620first strand
Strand 2
B
623 625anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il