Analysis of interatomic Contacts of Structural Units in PDB entry:
5UC5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UC5 entry

There are 4 chains in PDB entry 5UC5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2GLY 163
A
 PHE 165ALA 388
B
 VAL 2GLY 163
B
 PHE 165ASP 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 5UC5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 12Right-handed alpha
Helix 2
AA2
A
35 44Right-handed alpha
Helix 3
AA3
A
49 62Right-handed alpha
Helix 4
AA4
A
73 80Right-handed alpha
Helix 5
AA5
A
80 85Right-handed alpha
Helix 6
AA6
A
90 118Right-handed alpha
Helix 7
AA7
A
120 124Right-handed 310
Helix 8
AA8
A
139 149Right-handed alpha
Helix 9
AA9
A
165 180Right-handed alpha
Helix 10
AB1
A
193 197Right-handed 310
Helix 11
AB2
A
205 215Right-handed alpha
Helix 12
AB3
A
270 288Right-handed alpha
Helix 13
AB4
A
289 291Right-handed 310
Helix 14
AB5
A
294 298Right-handed 310
Helix 15
AB6
A
306 318Right-handed alpha
Helix 16
AB7
A
324 335Right-handed alpha
Helix 17
AB8
A
337 339Right-handed 310
Helix 18
AB9
A
340 357Right-handed alpha
Helix 19
AC1
B
3 12Right-handed alpha
Helix 20
AC2
B
35 44Right-handed alpha
Helix 21
AC3
B
49 63Right-handed alpha
Helix 22
AC4
B
73 80Right-handed alpha
Helix 23
AC5
B
80 85Right-handed alpha
Helix 24
AC6
B
90 118Right-handed alpha
Helix 25
AC7
B
120 124Right-handed 310
Helix 26
AC8
B
139 149Right-handed alpha
Helix 27
AC9
B
165 180Right-handed alpha
Helix 28
AD1
B
193 197Right-handed 310
Helix 29
AD2
B
205 215Right-handed alpha
Helix 30
AD3
B
270 288Right-handed alpha
Helix 31
AD4
B
294 298Right-handed 310
Helix 32
AD5
B
306 317Right-handed alpha
Helix 33
AD6
B
324 335Right-handed alpha
Helix 34
AD7
B
337 339Right-handed 310
Helix 35
AD8
B
340 357Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5UC5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 160first strand
Strand 2
A
126 131parallel
Strand 3
A
185 192parallel
Strand 4
A
218 225anti-parallel
Strand 5
A
18 25anti-parallel
Strand 6
A
237 246anti-parallel
Strand 7
A
378 386anti-parallel
Strand 8
A
367 374anti-parallel
Strand 9
A
299 302parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
67 69anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 267first strand
Strand 2
A
254 259anti-parallel
Strand 3
B
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 160first strand
Strand 2
B
126 131parallel
Strand 3
B
185 192parallel
Strand 4
B
218 225anti-parallel
Strand 5
B
17 25anti-parallel
Strand 6
B
237 246anti-parallel
Strand 7
B
378 386anti-parallel
Strand 8
B
367 374anti-parallel
Strand 9
B
299 302parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
67 69anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 259first strand
Strand 2
B
262 267anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il