Analysis of interatomic Contacts of Structural Units in PDB entry:
5UCD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UCD entry

There are 4 chains in PDB entry 5UCD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2THR 248
A
 ILE 250PRO 436
B
 ASN 2THR 248
B
 ILE 250PRO 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5UCD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 22Right-handed alpha
Helix 2
AA2
A
27 44Right-handed alpha
Helix 3
AA3
A
45 58Right-handed alpha
Helix 4
AA4
A
60 68Right-handed alpha
Helix 5
AA5
A
68 87Right-handed alpha
Helix 6
AA6
A
95 99Right-handed 310
Helix 7
AA7
A
123 137Right-handed alpha
Helix 8
AA8
A
148 163Right-handed alpha
Helix 9
AA9
A
174 182Right-handed alpha
Helix 10
AB1
A
194 207Right-handed alpha
Helix 11
AB2
A
229 243Right-handed alpha
Helix 12
AB3
A
244 247Right-handed 310
Helix 13
AB4
A
259 277Right-handed alpha
Helix 14
AB5
A
288 302Right-handed alpha
Helix 15
AB6
A
314 317Right-handed 310
Helix 16
AB7
A
350 362Right-handed alpha
Helix 17
AB8
A
374 383Right-handed alpha
Helix 18
AB9
A
396 401Right-handed 310
Helix 19
AC1
A
409 411Right-handed 310
Helix 20
AC2
A
419 426Right-handed alpha
Helix 21
AC3
B
5 22Right-handed alpha
Helix 22
AC4
B
27 45Right-handed alpha
Helix 23
AC5
B
45 58Right-handed alpha
Helix 24
AC6
B
60 68Right-handed alpha
Helix 25
AC7
B
68 87Right-handed alpha
Helix 26
AC8
B
95 99Right-handed 310
Helix 27
AC9
B
123 136Right-handed alpha
Helix 28
AD1
B
148 163Right-handed alpha
Helix 29
AD2
B
174 183Right-handed alpha
Helix 30
AD3
B
194 207Right-handed alpha
Helix 31
AD4
B
229 243Right-handed alpha
Helix 32
AD5
B
244 247Right-handed 310
Helix 33
AD6
B
259 277Right-handed alpha
Helix 34
AD7
B
288 302Right-handed alpha
Helix 35
AD8
B
331 335Right-handed 310
Helix 36
AD9
B
350 362Right-handed alpha
Helix 37
AE1
B
374 384Right-handed alpha
Helix 38
AE2
B
396 401Right-handed 310
Helix 39
AE3
B
409 411Right-handed 310
Helix 40
AE4
B
419 426Right-handed alpha
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There are 6 sheets in PDB entry 5UCD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
102 109anti-parallel
Strand 3
A
427 434anti-parallel
Strand 4
B
389 392parallel
Strand 5
B
367 371parallel
Strand 6
B
220 224parallel
Strand 7
B
252 258parallel
Strand 8
B
342 348parallel
Strand 9
B
322 325parallel
Strand 10
B
305 308anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
139 143parallel
Strand 3
A
112 116parallel
Strand 4
A
188 192parallel
Strand 5
A
212 215parallel
Strand 6
A
413 414anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 308first strand
Strand 2
A
322 325anti-parallel
Strand 3
A
342 348parallel
Strand 4
A
252 258parallel
Strand 5
A
220 224parallel
Strand 6
A
367 371parallel
Strand 7
A
389 392parallel
Strand 8
B
427 434parallel
Strand 9
B
102 109anti-parallel
Strand 10
B
90 92anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 313first strand
Strand 2
A
318 319anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 170first strand
Strand 2
B
139 143parallel
Strand 3
B
112 116parallel
Strand 4
B
188 192parallel
Strand 5
B
212 215parallel
Strand 6
B
413 414anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
312 313first strand
Strand 2
B
318 319anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il