Analysis of interatomic Contacts of Structural Units in PDB entry:
5UCG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UCG entry

There are 4 chains in PDB entry 5UCG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 465	PRO 809
E	LEU 467	PRO 809
B	ALA 465	ILE 804
C	LEU 469	ALA 737

There are 40 helices in PDB entry 5UCG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	472	519	Right-handed alpha
Helix 2	AA2	A	548	553	Right-handed alpha
Helix 3	AA3	A	554	562	Right-handed alpha
Helix 4	AA4	A	633	651	Right-handed alpha
Helix 5	AA5	A	652	654	Right-handed 310
Helix 6	AA6	A	656	668	Right-handed alpha
Helix 7	AA7	A	745	750	Right-handed alpha
Helix 8	AA8	A	757	768	Right-handed alpha
Helix 9	AA9	A	773	788	Right-handed alpha
Helix 10	AB1	E	471	518	Right-handed alpha
Helix 11	AB2	E	548	553	Right-handed alpha
Helix 12	AB3	E	553	562	Right-handed alpha
Helix 13	AB4	E	634	651	Right-handed alpha
Helix 14	AB5	E	656	668	Right-handed alpha
Helix 15	AB6	E	745	750	Right-handed alpha
Helix 16	AB7	E	757	768	Right-handed alpha
Helix 17	AB8	E	773	789	Right-handed alpha
Helix 18	AB9	B	471	518	Right-handed alpha
Helix 19	AC1	B	553	562	Right-handed alpha
Helix 20	AC2	B	632	651	Right-handed alpha
Helix 21	AC3	B	656	668	Right-handed alpha
Helix 22	AC4	B	745	750	Right-handed alpha
Helix 23	AC5	B	757	768	Right-handed alpha
Helix 24	AC6	B	773	788	Right-handed alpha
Helix 25	AC7	C	472	515	Right-handed alpha
Helix 26	AC8	C	515	520	Right-handed alpha
Helix 27	AC9	C	549	553	Right-handed alpha
Helix 28	AD1	C	553	562	Right-handed alpha
Helix 29	AD2	C	636	651	Right-handed alpha
Helix 30	AD3	C	656	668	Right-handed alpha
Helix 31	AD4	C	745	750	Right-handed alpha
Helix 32	AD5	C	757	768	Right-handed alpha
Helix 33	AD6	C	773	788	Right-handed alpha
Helix 34	AD7	D	470	518	Right-handed alpha
Helix 35	AD8	D	556	562	Right-handed alpha
Helix 36	AD9	D	632	651	Right-handed alpha
Helix 37	AE1	D	656	668	Right-handed alpha
Helix 38	AE2	D	745	750	Right-handed alpha
Helix 39	AE3	D	757	768	Right-handed alpha
Helix 40	AE4	D	773	788	Right-handed alpha

There are 23 sheets in PDB entry 5UCG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	531	first strand
Strand 2	A	536	542	anti-parallel
Strand 3	A	581	587	anti-parallel
Strand 4	A	566	572	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	592	600	first strand
Strand 2	A	797	805	anti-parallel
Strand 3	A	740	744	anti-parallel
Strand 4	A	702	706	anti-parallel
Strand 5	A	709	713	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	611	613	first strand
Strand 2	A	621	627	anti-parallel
Strand 3	A	616	617	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	611	613	first strand
Strand 2	A	621	627	anti-parallel
Strand 3	A	680	686	anti-parallel
Strand 4	A	691	696	anti-parallel
Strand 5	A	730	734	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	527	531	first strand
Strand 2	E	536	542	anti-parallel
Strand 3	E	581	587	anti-parallel
Strand 4	E	566	567	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	527	531	first strand
Strand 2	E	536	542	anti-parallel
Strand 3	E	581	587	anti-parallel
Strand 4	E	570	572	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	592	600	first strand
Strand 2	E	797	805	anti-parallel
Strand 3	E	740	744	anti-parallel
Strand 4	E	702	706	anti-parallel
Strand 5	E	709	713	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	611	613	first strand
Strand 2	E	621	627	anti-parallel
Strand 3	E	616	617	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	611	613	first strand
Strand 2	E	621	627	anti-parallel
Strand 3	E	680	686	anti-parallel
Strand 4	E	691	696	anti-parallel
Strand 5	E	731	734	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	527	531	first strand
Strand 2	B	536	541	anti-parallel
Strand 3	B	582	587	anti-parallel
Strand 4	B	566	567	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	527	531	first strand
Strand 2	B	536	541	anti-parallel
Strand 3	B	582	587	anti-parallel
Strand 4	B	570	571	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	597	600	first strand
Strand 2	B	797	803	anti-parallel
Strand 3	B	740	744	anti-parallel
Strand 4	B	702	706	anti-parallel
Strand 5	B	709	713	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	611	613	first strand
Strand 2	B	621	627	anti-parallel
Strand 3	B	616	617	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	611	613	first strand
Strand 2	B	621	627	anti-parallel
Strand 3	B	680	686	anti-parallel
Strand 4	B	691	697	anti-parallel
Strand 5	B	731	734	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	527	531	first strand
Strand 2	C	536	540	anti-parallel
Strand 3	C	582	587	anti-parallel
Strand 4	C	566	571	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	592	600	first strand
Strand 2	C	797	805	anti-parallel
Strand 3	C	740	744	anti-parallel
Strand 4	C	702	706	anti-parallel
Strand 5	C	709	713	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	611	613	first strand
Strand 2	C	621	627	anti-parallel
Strand 3	C	616	617	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	611	613	first strand
Strand 2	C	621	627	anti-parallel
Strand 3	C	680	686	anti-parallel
Strand 4	C	691	696	anti-parallel
Strand 5	C	731	734	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	527	531	first strand
Strand 2	D	536	543	anti-parallel
Strand 3	D	580	587	anti-parallel
Strand 4	D	566	567	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	527	531	first strand
Strand 2	D	536	543	anti-parallel
Strand 3	D	580	587	anti-parallel
Strand 4	D	570	571	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	592	600	first strand
Strand 2	D	797	805	anti-parallel
Strand 3	D	740	744	anti-parallel
Strand 4	D	702	706	anti-parallel
Strand 5	D	709	713	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	613	first strand
Strand 2	D	621	628	anti-parallel
Strand 3	D	616	617	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	613	first strand
Strand 2	D	621	628	anti-parallel
Strand 3	D	679	686	anti-parallel
Strand 4	D	691	696	anti-parallel
Strand 5	D	730	734	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UCG

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UCG