Analysis of interatomic Contacts of Structural Units in PDB entry:
5UCO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UCO entry

There are 2 chains in PDB entry 5UCO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 18LEU 394
B
 LYS 18LEU 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5UCO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 46Right-handed alpha
Helix 2
AA2
A
52 67Right-handed alpha
Helix 3
AA3
A
76 82Right-handed alpha
Helix 4
AA4
A
83 88Right-handed alpha
Helix 5
AA5
A
93 121Right-handed alpha
Helix 6
AA6
A
123 127Right-handed 310
Helix 7
AA7
A
142 152Right-handed alpha
Helix 8
AA8
A
165 167Right-handed 310
Helix 9
AA9
A
168 184Right-handed alpha
Helix 10
AB1
A
209 216Right-handed alpha
Helix 11
AB2
A
232 236Right-handed 310
Helix 12
AB3
A
274 281Right-handed alpha
Helix 13
AB4
A
282 292Right-handed alpha
Helix 14
AB5
A
293 295Right-handed 310
Helix 15
AB6
A
309 322Right-handed alpha
Helix 16
AB7
A
324 327Right-handed 310
Helix 17
AB8
A
328 339Right-handed alpha
Helix 18
AB9
A
341 343Right-handed 310
Helix 19
AC1
A
344 360Right-handed alpha
Helix 20
AC2
B
38 46Right-handed alpha
Helix 21
AC3
B
52 65Right-handed alpha
Helix 22
AC4
B
78 83Right-handed alpha
Helix 23
AC5
B
93 121Right-handed alpha
Helix 24
AC6
B
123 127Right-handed 310
Helix 25
AC7
B
142 151Right-handed alpha
Helix 26
AC8
B
165 167Right-handed 310
Helix 27
AC9
B
168 184Right-handed alpha
Helix 28
AD1
B
208 215Right-handed alpha
Helix 29
AD2
B
232 236Right-handed 310
Helix 30
AD3
B
274 292Right-handed alpha
Helix 31
AD4
B
293 295Right-handed 310
Helix 32
AD5
B
310 322Right-handed alpha
Helix 33
AD6
B
324 327Right-handed 310
Helix 34
AD7
B
328 339Right-handed alpha
Helix 35
AD8
B
341 343Right-handed 310
Helix 36
AD9
B
344 361Right-handed alpha
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There are 6 sheets in PDB entry 5UCO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 163first strand
Strand 2
A
129 134parallel
Strand 3
A
188 194parallel
Strand 4
A
222 229anti-parallel
Strand 5
A
20 28anti-parallel
Strand 6
A
241 250anti-parallel
Strand 7
A
382 389anti-parallel
Strand 8
A
371 378anti-parallel
Strand 9
A
302 306parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
70 72anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
B
258 263anti-parallel
Strand 3
B
266 271anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 263first strand
Strand 2
A
266 271anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 163first strand
Strand 2
B
129 134parallel
Strand 3
B
188 195parallel
Strand 4
B
221 229anti-parallel
Strand 5
B
20 28anti-parallel
Strand 6
B
241 250anti-parallel
Strand 7
B
382 390anti-parallel
Strand 8
B
371 378anti-parallel
Strand 9
B
303 306parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
70 72anti-parallel
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