Analysis of interatomic Contacts of Structural Units in PDB entry:
5UCQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UCQ entry

There are 3 chains in PDB entry 5UCQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 175
B
 MET 1LYS 176
C
 MET 1GLY 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5UCQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed alpha
Helix 2
AA2
A
113 117Right-handed 310
Helix 3
AA3
A
121 125Right-handed 310
Helix 4
AA4
A
126 140Right-handed alpha
Helix 5
AA5
A
141 145Right-handed 310
Helix 6
AA6
A
156 175Right-handed alpha
Helix 7
AA7
B
2 7Right-handed alpha
Helix 8
AA8
B
113 117Right-handed 310
Helix 9
AA9
B
121 125Right-handed 310
Helix 10
AB1
B
126 140Right-handed alpha
Helix 11
AB2
B
141 145Right-handed 310
Helix 12
AB3
B
156 174Right-handed alpha
Helix 13
AB4
C
2 7Right-handed alpha
Helix 14
AB5
C
113 117Right-handed 310
Helix 15
AB6
C
121 125Right-handed 310
Helix 16
AB7
C
126 140Right-handed alpha
Helix 17
AB8
C
156 175Right-handed alpha
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There are 3 sheets in PDB entry 5UCQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
84 98anti-parallel
Strand 3
A
17 23anti-parallel
Strand 4
A
55 58anti-parallel
Strand 5
A
71 74anti-parallel
Strand 6
A
105 110parallel
Strand 7
A
84 98anti-parallel
Strand 8
A
148 155anti-parallel
Strand 9
A
84 98anti-parallel
Strand 10
B
40 45parallel
Strand 11
B
29 33anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
40 45anti-parallel
Strand 3
C
84 98parallel
Strand 4
C
148 155anti-parallel
Strand 5
C
84 98anti-parallel
Strand 6
C
101 102anti-parallel
Strand 7
C
84 98anti-parallel
Strand 8
C
17 23anti-parallel
Strand 9
C
55 58anti-parallel
Strand 10
C
71 74anti-parallel
Strand 11
C
105 110parallel
Strand 12
C
84 98anti-parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
84 98anti-parallel
Strand 3
B
17 23anti-parallel
Strand 4
B
55 58anti-parallel
Strand 5
B
71 74anti-parallel
Strand 6
B
105 110parallel
Strand 7
B
84 98anti-parallel
Strand 8
B
148 155anti-parallel
Strand 9
B
84 98anti-parallel
Strand 10
C
40 45parallel
Strand 11
C
29 33anti-parallel
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