Analysis of interatomic Contacts of Structural Units in PDB entry:
5UCY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UCY entry

There are 2 chains in PDB entry 5UCY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 441
B
 MET 1THR 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5UCY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 28Right-handed alpha
Helix 2
AA2
A
48 52Right-handed 310
Helix 3
AA3
A
72 81Right-handed alpha
Helix 4
AA4
A
82 85Right-handed 310
Helix 5
AA5
A
88 90Right-handed 310
Helix 6
AA6
A
102 108Right-handed alpha
Helix 7
AA7
A
110 129Right-handed alpha
Helix 8
AA8
A
143 146Right-handed 310
Helix 9
AA9
A
147 161Right-handed alpha
Helix 10
AB1
A
182 195Right-handed alpha
Helix 11
AB2
A
196 198Right-handed 310
Helix 12
AB3
A
205 216Right-handed alpha
Helix 13
AB4
A
223 238Right-handed alpha
Helix 14
AB5
A
239 243Right-handed 310
Helix 15
AB6
A
251 260Right-handed alpha
Helix 16
AB7
A
277 282Right-handed alpha
Helix 17
AB8
A
287 294Right-handed alpha
Helix 18
AB9
A
295 301Right-handed 310
Helix 19
AC1
A
306 310Right-handed 310
Helix 20
AC2
A
324 337Right-handed alpha
Helix 21
AC3
A
384 401Right-handed alpha
Helix 22
AC4
A
404 410Right-handed alpha
Helix 23
AC5
A
414 435Right-handed alpha
Helix 24
AC6
B
12 29Right-handed alpha
Helix 25
AC7
B
41 46Right-handed alpha
Helix 26
AC8
B
47 49Right-handed 310
Helix 27
AC9
B
70 78Right-handed alpha
Helix 28
AD1
B
81 85Right-handed 310
Helix 29
AD2
B
86 90Right-handed 310
Helix 30
AD3
B
100 106Right-handed alpha
Helix 31
AD4
B
108 126Right-handed alpha
Helix 32
AD5
B
144 159Right-handed alpha
Helix 33
AD6
B
180 196Right-handed alpha
Helix 34
AD7
B
204 213Right-handed alpha
Helix 35
AD8
B
221 236Right-handed alpha
Helix 36
AD9
B
237 242Right-handed alpha
Helix 37
AE1
B
249 256Right-handed alpha
Helix 38
AE2
B
260 263Right-handed 310
Helix 39
AE3
B
275 281Right-handed 310
Helix 40
AE4
B
285 294Right-handed alpha
Helix 41
AE5
B
322 337Right-handed alpha
Helix 42
AE6
B
338 341Right-handed 310
Helix 43
AE7
B
374 392Right-handed alpha
Helix 44
AE8
B
394 400Right-handed alpha
Helix 45
AE9
B
404 427Right-handed alpha
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There are 5 sheets in PDB entry 5UCY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
3 8parallel
Strand 4
A
132 140parallel
Strand 5
A
165 171parallel
Strand 6
A
200 204parallel
Strand 7
A
267 270parallel
Strand 8
A
373 380anti-parallel
Strand 9
A
314 321anti-parallel
Strand 10
A
354 356parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
4 8parallel
Strand 3
B
132 138parallel
Strand 4
B
163 169parallel
Strand 5
B
198 202parallel
Strand 6
B
265 266parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
59 61anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 271first strand
Strand 2
B
363 367anti-parallel
Strand 3
B
318 319anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 350first strand
Strand 2
B
310 314parallel
Strand 3
B
370 371anti-parallel
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