Analysis of interatomic Contacts of Structural Units in PDB entry:
5UD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UD7 entry

There are 6 chains in PDB entry 5UD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 21LEU 129
B
 ASP 20ALA 130
C
 THR 21ALA 130
D
 THR 21ALA 130
E
 THR 21ALA 130
F
 THR 21ALA 130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5UD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 73Right-handed 310
Helix 2
AA2
A
101 105Right-handed 310
Helix 3
AA3
B
69 73Right-handed 310
Helix 4
AA4
B
101 105Right-handed 310
Helix 5
AA5
C
69 73Right-handed 310
Helix 6
AA6
C
101 105Right-handed 310
Helix 7
AA7
D
69 73Right-handed 310
Helix 8
AA8
D
101 105Right-handed 310
Helix 9
AA9
E
69 73Right-handed 310
Helix 10
AB1
E
101 105Right-handed 310
Helix 11
AB2
F
69 73Right-handed 310
Helix 12
AB3
F
101 105Right-handed 310
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There are 12 sheets in PDB entry 5UD7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 27first strand
Strand 2
A
117 129parallel
Strand 3
A
106 114anti-parallel
Strand 4
A
48 52anti-parallel
Strand 5
A
61 65anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 37first strand
Strand 2
A
92 97anti-parallel
Strand 3
A
82 87anti-parallel
Strand 4
A
77 79anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 27first strand
Strand 2
B
117 129parallel
Strand 3
B
106 114anti-parallel
Strand 4
B
48 52anti-parallel
Strand 5
B
61 65anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 37first strand
Strand 2
B
92 97anti-parallel
Strand 3
B
82 87anti-parallel
Strand 4
B
77 79anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 26first strand
Strand 2
C
117 128parallel
Strand 3
C
106 114anti-parallel
Strand 4
C
48 53anti-parallel
Strand 5
C
60 65anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 37first strand
Strand 2
C
92 97anti-parallel
Strand 3
C
82 87anti-parallel
Strand 4
C
77 79anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 27first strand
Strand 2
D
117 129parallel
Strand 3
D
106 114anti-parallel
Strand 4
D
48 52anti-parallel
Strand 5
D
61 65anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 37first strand
Strand 2
D
92 97anti-parallel
Strand 3
D
82 87anti-parallel
Strand 4
D
77 79anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
22 27first strand
Strand 2
E
117 129parallel
Strand 3
E
106 114anti-parallel
Strand 4
E
48 52anti-parallel
Strand 5
E
61 65anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
32 37first strand
Strand 2
E
92 97anti-parallel
Strand 3
E
82 87anti-parallel
Strand 4
E
77 79anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
22 27first strand
Strand 2
F
117 129parallel
Strand 3
F
106 114anti-parallel
Strand 4
F
48 53anti-parallel
Strand 5
F
60 65anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
32 37first strand
Strand 2
F
92 97anti-parallel
Strand 3
F
82 87anti-parallel
Strand 4
F
77 79anti-parallel
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