Analysis of interatomic Contacts of Structural Units in PDB entry:
5UDC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UDC entry

There are 6 chains in PDB entry 5UDC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	VAL 2	VAL 211
L	ASP 1	ARG 211
F	ASN 27	LEU 513
B	VAL 2	PRO 213
C	ASP 1	ARG 211
A	ASN 27	GLU 30

There are 69 helices in PDB entry 5UDC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	28	30	Right-handed 310
Helix 2	AA2	H	83	87	Right-handed 310
Helix 3	AA3	H	185	189	Right-handed 310
Helix 4	AA4	H	201	204	Right-handed 310
Helix 5	AA5	L	79	83	Right-handed 310
Helix 6	AA6	L	121	127	Right-handed alpha
Helix 7	AA7	L	183	187	Right-handed alpha
Helix 8	AA8	F	73	98	Right-handed alpha
Helix 9	AA9	F	138	142	Right-handed 310
Helix 10	AB1	F	148	159	Right-handed alpha
Helix 11	AB2	F	162	171	Right-handed alpha
Helix 12	AB3	F	195	202	Right-handed alpha
Helix 13	AB4	F	202	210	Right-handed alpha
Helix 14	AB5	F	216	240	Right-handed alpha
Helix 15	AB6	F	253	264	Right-handed alpha
Helix 16	AB7	F	267	277	Right-handed alpha
Helix 17	AB8	F	277	284	Right-handed alpha
Helix 18	AB9	F	354	358	Right-handed 310
Helix 19	AC1	F	370	372	Right-handed 310
Helix 20	AC2	F	376	379	Right-handed 310
Helix 21	AC3	F	380	385	Right-handed alpha
Helix 22	AC4	F	473	478	Right-handed 310
Helix 23	AC5	F	492	512	Right-handed alpha
Helix 24	AC6	B	28	30	Right-handed 310
Helix 25	AC7	B	83	87	Right-handed 310
Helix 26	AC8	B	156	158	Right-handed 310
Helix 27	AC9	B	185	189	Right-handed 310
Helix 28	AD1	B	201	204	Right-handed 310
Helix 29	AD2	C	79	83	Right-handed 310
Helix 30	AD3	C	121	127	Right-handed alpha
Helix 31	AD4	C	183	187	Right-handed alpha
Helix 32	AD5	A	73	98	Right-handed alpha
Helix 33	AD6	A	138	142	Right-handed 310
Helix 34	AD7	A	148	159	Right-handed alpha
Helix 35	AD8	A	162	171	Right-handed alpha
Helix 36	AD9	A	195	202	Right-handed alpha
Helix 37	AE1	A	203	210	Right-handed alpha
Helix 38	AE2	A	216	241	Right-handed alpha
Helix 39	AE3	A	253	264	Right-handed alpha
Helix 40	AE4	A	267	277	Right-handed alpha
Helix 41	AE5	A	277	284	Right-handed alpha
Helix 42	AE6	A	354	358	Right-handed 310
Helix 43	AE7	A	370	372	Right-handed 310
Helix 44	AE8	A	376	384	Right-handed 310
Helix 45	AE9	A	473	478	Right-handed 310
Helix 46	AF1	A	492	511	Right-handed alpha
Helix 47	AF2	E	28	30	Right-handed 310
Helix 48	AF3	E	83	87	Right-handed 310
Helix 49	AF4	E	156	158	Right-handed 310
Helix 50	AF5	E	185	189	Right-handed 310
Helix 51	AF6	E	201	204	Right-handed 310
Helix 52	AF7	G	79	83	Right-handed 310
Helix 53	AF8	G	121	127	Right-handed alpha
Helix 54	AF9	G	183	187	Right-handed alpha
Helix 55	AG1	D	73	97	Right-handed alpha
Helix 56	AG2	D	138	142	Right-handed 310
Helix 57	AG3	D	148	159	Right-handed alpha
Helix 58	AG4	D	162	171	Right-handed alpha
Helix 59	AG5	D	195	202	Right-handed alpha
Helix 60	AG6	D	203	210	Right-handed alpha
Helix 61	AG7	D	216	241	Right-handed alpha
Helix 62	AG8	D	253	264	Right-handed alpha
Helix 63	AG9	D	267	277	Right-handed alpha
Helix 64	AH1	D	277	284	Right-handed alpha
Helix 65	AH2	D	354	358	Right-handed 310
Helix 66	AH3	D	370	372	Right-handed 310
Helix 67	AH4	D	376	384	Right-handed 310
Helix 68	AH5	D	473	478	Right-handed 310
Helix 69	AH6	D	492	513	Right-handed alpha

There are 53 sheets in PDB entry 5UDC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	32	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	56	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	99	100	first strand
Strand 2	F	64	67	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	136	145	anti-parallel
Strand 3	H	176	184	anti-parallel
Strand 4	H	163	165	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	136	145	anti-parallel
Strand 3	H	176	184	anti-parallel
Strand 4	H	169	170	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	154	first strand
Strand 2	H	195	200	anti-parallel
Strand 3	H	205	210	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	205	210	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	359	361	first strand
Strand 2	F	364	368	anti-parallel
Strand 3	F	38	49	parallel
Strand 4	F	308	318	anti-parallel
Strand 5	F	340	345	anti-parallel
Strand 6	F	348	352	anti-parallel
Strand 7	F	373	375	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	359	361	first strand
Strand 2	F	364	368	anti-parallel
Strand 3	F	38	49	parallel
Strand 4	F	29	33	anti-parallel
Strand 5	F	465	469	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	176	180	first strand
Strand 2	F	186	194	anti-parallel
Strand 3	F	51	60	parallel
Strand 4	F	296	305	anti-parallel
Strand 5	F	286	293	anti-parallel
Strand 6	F	243	244	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	321	322	first strand
Strand 2	F	333	336	anti-parallel
Strand 3	F	394	398	anti-parallel
Strand 4	F	490	491	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	404	407	first strand
Strand 2	F	411	416	anti-parallel
Strand 3	F	438	443	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	430	434	first strand
Strand 2	F	422	426	anti-parallel
Strand 3	F	449	452	anti-parallel
Strand 4	F	455	458	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	67	72	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	107	111	parallel
Strand 3	B	88	96	anti-parallel
Strand 4	B	32	39	anti-parallel
Strand 5	B	45	52	anti-parallel
Strand 6	B	56	59	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	107	111	parallel
Strand 3	B	88	96	anti-parallel
Strand 4	B	102	103	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	124	first strand
Strand 2	B	136	145	anti-parallel
Strand 3	B	176	184	anti-parallel
Strand 4	B	163	165	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	124	first strand
Strand 2	B	136	145	anti-parallel
Strand 3	B	176	184	anti-parallel
Strand 4	B	169	170	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	154	first strand
Strand 2	B	194	200	anti-parallel
Strand 3	B	205	211	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	67	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	102	107	parallel
Strand 3	C	84	90	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	44	49	anti-parallel
Strand 6	C	53	54	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	102	107	parallel
Strand 3	C	84	90	anti-parallel
Strand 4	C	97	98	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	129	139	anti-parallel
Strand 3	C	173	182	anti-parallel
Strand 4	C	159	163	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	154	first strand
Strand 2	C	145	150	anti-parallel
Strand 3	C	191	197	anti-parallel
Strand 4	C	205	210	anti-parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	361	first strand
Strand 2	A	364	368	anti-parallel
Strand 3	A	38	49	parallel
Strand 4	A	308	318	anti-parallel
Strand 5	A	340	345	anti-parallel
Strand 6	A	348	352	anti-parallel
Strand 7	A	373	375	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	361	first strand
Strand 2	A	364	368	anti-parallel
Strand 3	A	38	49	parallel
Strand 4	A	29	33	anti-parallel
Strand 5	A	465	469	parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	180	first strand
Strand 2	A	186	194	anti-parallel
Strand 3	A	51	60	parallel
Strand 4	A	296	305	anti-parallel
Strand 5	A	286	293	anti-parallel
Strand 6	A	243	244	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	333	336	anti-parallel
Strand 3	A	394	398	anti-parallel
Strand 4	A	490	491	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	407	first strand
Strand 2	A	411	416	anti-parallel
Strand 3	A	438	443	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	A	422	426	anti-parallel
Strand 3	A	449	452	anti-parallel
Strand 4	A	455	458	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	107	111	parallel
Strand 3	E	88	96	anti-parallel
Strand 4	E	32	39	anti-parallel
Strand 5	E	45	52	anti-parallel
Strand 6	E	56	59	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	107	111	parallel
Strand 3	E	88	96	anti-parallel
Strand 4	E	102	103	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	100	first strand
Strand 2	D	64	67	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	124	first strand
Strand 2	E	136	145	anti-parallel
Strand 3	E	176	184	anti-parallel
Strand 4	E	163	165	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	124	first strand
Strand 2	E	136	145	anti-parallel
Strand 3	E	176	184	anti-parallel
Strand 4	E	169	170	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	154	first strand
Strand 2	E	194	200	anti-parallel
Strand 3	E	205	211	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	62	67	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	102	107	parallel
Strand 3	G	85	90	anti-parallel
Strand 4	G	33	38	anti-parallel
Strand 5	G	44	49	anti-parallel
Strand 6	G	53	54	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	102	107	parallel
Strand 3	G	85	90	anti-parallel
Strand 4	G	97	98	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	114	118	first strand
Strand 2	G	129	139	anti-parallel
Strand 3	G	173	182	anti-parallel
Strand 4	G	159	163	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	153	154	first strand
Strand 2	G	145	150	anti-parallel
Strand 3	G	191	197	anti-parallel
Strand 4	G	205	210	anti-parallel

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There are 7 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	359	361	first strand
Strand 2	D	364	368	anti-parallel
Strand 3	D	38	60	parallel
Strand 4	D	296	318	anti-parallel
Strand 5	D	340	345	anti-parallel
Strand 6	D	348	352	anti-parallel
Strand 7	D	373	375	anti-parallel

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There are 6 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	465	469	first strand
Strand 2	D	29	33	parallel
Strand 3	D	38	60	anti-parallel
Strand 4	D	296	318	anti-parallel
Strand 5	D	286	293	anti-parallel
Strand 6	D	243	244	anti-parallel

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There are 7 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	180	first strand
Strand 2	D	186	194	anti-parallel
Strand 3	D	38	60	parallel
Strand 4	D	296	318	anti-parallel
Strand 5	D	340	345	anti-parallel
Strand 6	D	348	352	anti-parallel
Strand 7	D	373	375	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	321	322	first strand
Strand 2	D	333	336	anti-parallel
Strand 3	D	394	398	anti-parallel
Strand 4	D	490	491	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	404	407	first strand
Strand 2	D	411	416	anti-parallel
Strand 3	D	438	443	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	430	434	first strand
Strand 2	D	422	426	anti-parallel
Strand 3	D	449	452	anti-parallel
Strand 4	D	455	458	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UDC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UDC