Analysis of interatomic Contacts of Structural Units in PDB entry:
5UDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UDD entry

There are 3 chains in PDB entry 5UDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 26LEU 513
B
 GLN 26ALA 515
C
 ASN 27ASN 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are177 helices in PDB entry 5UDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 97Right-handed alpha
Helix 2
AA2
A
148 159Right-handed alpha
Helix 3
AA3
A
162 171Right-handed alpha
Helix 4
AA4
A
195 202Right-handed alpha
Helix 5
AA5
A
202 210Right-handed alpha
Helix 6
AA6
A
217 240Right-handed alpha
Helix 7
AA7
A
253 263Right-handed alpha
Helix 8
AA8
A
267 277Right-handed alpha
Helix 9
AA9
A
277 284Right-handed alpha
Helix 10
AB1
A
354 358Right-handed 310
Helix 11
AB2
A
370 372Right-handed 310
Helix 12
AB3
A
376 379Right-handed 310
Helix 13
AB4
A
380 385Right-handed alpha
Helix 14
AB5
A
473 478Right-handed 310
Helix 15
AB6
A
492 511Right-handed alpha
Helix 16
AB7
B
73 98Right-handed alpha
Helix 17
AB8
B
148 159Right-handed alpha
Helix 18
AB9
B
162 171Right-handed alpha
Helix 19
AC1
B
195 202Right-handed alpha
Helix 20
AC2
B
203 210Right-handed alpha
Helix 21
AC3
B
216 240Right-handed alpha
Helix 22
AC4
B
253 263Right-handed alpha
Helix 23
AC5
B
267 277Right-handed alpha
Helix 24
AC6
B
277 284Right-handed alpha
Helix 25
AC7
B
354 358Right-handed 310
Helix 26
AC8
B
370 372Right-handed 310
Helix 27
AC9
B
380 385Right-handed alpha
Helix 28
AD1
B
473 478Right-handed 310
Helix 29
AD2
B
492 514Right-handed alpha
Helix 30
AD3
C
73 98Right-handed alpha
Helix 31
AD4
C
148 159Right-handed alpha
Helix 32
AD5
C
162 171Right-handed alpha
Helix 33
AD6
C
195 202Right-handed alpha
Helix 34
AD7
C
202 210Right-handed alpha
Helix 35
AD8
C
217 241Right-handed alpha
Helix 36
AD9
C
253 263Right-handed alpha
Helix 37
AE1
C
267 277Right-handed alpha
Helix 38
AE2
C
277 284Right-handed alpha
Helix 39
AE3
C
354 358Right-handed 310
Helix 40
AE4
C
370 372Right-handed 310
Helix 41
AE5
C
380 385Right-handed alpha
Helix 42
AE6
C
473 478Right-handed 310
Helix 43
AE7
C
492 512Right-handed alpha
Helix 44
AE8
D
75 100Right-handed alpha
Helix 45
AE9
D
148 159Right-handed alpha
Helix 46
AF1
D
162 171Right-handed alpha
Helix 47
AF2
D
195 202Right-handed alpha
Helix 48
AF3
D
202 210Right-handed alpha
Helix 49
AF4
D
216 240Right-handed alpha
Helix 50
AF5
D
253 263Right-handed alpha
Helix 51
AF6
D
267 277Right-handed alpha
Helix 52
AF7
D
277 284Right-handed alpha
Helix 53
AF8
D
354 358Right-handed 310
Helix 54
AF9
D
370 372Right-handed 310
Helix 55
AG1
D
376 379Right-handed 310
Helix 56
AG2
D
380 385Right-handed alpha
Helix 57
AG3
D
473 478Right-handed 310
Helix 58
AG4
D
491 511Right-handed alpha
Helix 59
AG5
E
73 98Right-handed alpha
Helix 60
AG6
E
148 159Right-handed alpha
Helix 61
AG7
E
162 171Right-handed alpha
Helix 62
AG8
E
195 202Right-handed alpha
Helix 63
AG9
E
202 210Right-handed alpha
Helix 64
AH1
E
216 241Right-handed alpha
Helix 65
AH2
E
253 263Right-handed alpha
Helix 66
AH3
E
267 277Right-handed alpha
Helix 67
AH4
E
277 284Right-handed alpha
Helix 68
AH5
E
354 358Right-handed 310
Helix 69
AH6
E
370 372Right-handed 310
Helix 70
AH7
E
376 379Right-handed 310
Helix 71
AH8
E
380 385Right-handed alpha
Helix 72
AH9
E
473 478Right-handed 310
Helix 73
AI1
E
492 514Right-handed alpha
Helix 74
AI2
F
73 97Right-handed alpha
Helix 75
AI3
F
148 159Right-handed alpha
Helix 76
AI4
F
162 171Right-handed alpha
Helix 77
AI5
F
195 202Right-handed alpha
Helix 78
AI6
F
203 210Right-handed alpha
Helix 79
AI7
F
216 241Right-handed alpha
Helix 80
AI8
F
253 263Right-handed alpha
Helix 81
AI9
F
267 277Right-handed alpha
Helix 82
AJ1
F
277 284Right-handed alpha
Helix 83
AJ2
F
354 358Right-handed 310
Helix 84
AJ3
F
370 372Right-handed 310
Helix 85
AJ4
F
380 385Right-handed alpha
Helix 86
AJ5
F
473 478Right-handed 310
Helix 87
AJ6
F
492 511Right-handed alpha
Helix 88
AJ7
G
75 98Right-handed alpha
Helix 89
AJ8
G
148 159Right-handed alpha
Helix 90
AJ9
G
162 171Right-handed alpha
Helix 91
AK1
G
195 202Right-handed alpha
Helix 92
AK2
G
202 210Right-handed alpha
Helix 93
AK3
G
217 240Right-handed alpha
Helix 94
AK4
G
253 263Right-handed alpha
Helix 95
AK5
G
267 277Right-handed alpha
Helix 96
AK6
G
277 284Right-handed alpha
Helix 97
AK7
G
354 358Right-handed 310
Helix 98
AK8
G
370 372Right-handed 310
Helix 99
AK9
G
376 379Right-handed 310
Helix 100
AL1
G
380 385Right-handed alpha
Helix 101
AL2
G
473 478Right-handed 310
Helix 102
AL3
G
492 511Right-handed alpha
Helix 103
AL4
H
73 97Right-handed alpha
Helix 104
AL5
H
148 159Right-handed alpha
Helix 105
AL6
H
162 171Right-handed alpha
Helix 106
AL7
H
195 202Right-handed alpha
Helix 107
AL8
H
202 210Right-handed alpha
Helix 108
AL9
H
217 240Right-handed alpha
Helix 109
AM1
H
253 263Right-handed alpha
Helix 110
AM2
H
267 277Right-handed alpha
Helix 111
AM3
H
277 284Right-handed alpha
Helix 112
AM4
H
354 358Right-handed 310
Helix 113
AM5
H
370 372Right-handed 310
Helix 114
AM6
H
376 379Right-handed 310
Helix 115
AM7
H
380 385Right-handed alpha
Helix 116
AM8
H
473 478Right-handed 310
Helix 117
AM9
H
492 514Right-handed alpha
Helix 118
AN1
I
75 97Right-handed alpha
Helix 119
AN2
I
148 159Right-handed alpha
Helix 120
AN3
I
162 171Right-handed alpha
Helix 121
AN4
I
195 202Right-handed alpha
Helix 122
AN5
I
202 210Right-handed alpha
Helix 123
AN6
I
217 227Right-handed alpha
Helix 124
AN7
I
227 241Right-handed alpha
Helix 125
AN8
I
253 263Right-handed alpha
Helix 126
AN9
I
267 277Right-handed alpha
Helix 127
AO1
I
277 284Right-handed alpha
Helix 128
AO2
I
354 358Right-handed 310
Helix 129
AO3
I
370 372Right-handed 310
Helix 130
AO4
I
376 379Right-handed 310
Helix 131
AO5
I
380 385Right-handed alpha
Helix 132
AO6
I
473 478Right-handed 310
Helix 133
AO7
I
492 511Right-handed alpha
Helix 134
AO8
J
28 30Right-handed 310
Helix 135
AO9
J
83 87Right-handed 310
Helix 136
AP1
J
187 189Right-handed 310
Helix 137
AP2
J
201 204Right-handed 310
Helix 138
AP3
K
28 30Right-handed 310
Helix 139
AP4
K
83 87Right-handed 310
Helix 140
AP5
K
156 158Right-handed 310
Helix 141
AP6
K
185 189Right-handed 310
Helix 142
AP7
K
201 204Right-handed 310
Helix 143
AP8
L
28 30Right-handed 310
Helix 144
AP9
L
83 87Right-handed 310
Helix 145
AQ1
L
185 189Right-handed 310
Helix 146
AQ2
L
201 204Right-handed 310
Helix 147
AQ3
M
28 30Right-handed 310
Helix 148
AQ4
M
83 87Right-handed 310
Helix 149
AQ5
M
185 189Right-handed 310
Helix 150
AQ6
M
201 204Right-handed 310
Helix 151
AQ7
N
28 30Right-handed 310
Helix 152
AQ8
N
83 87Right-handed 310
Helix 153
AQ9
N
187 189Right-handed 310
Helix 154
AR1
N
201 204Right-handed 310
Helix 155
AR2
O
28 30Right-handed 310
Helix 156
AR3
O
83 87Right-handed 310
Helix 157
AR4
O
156 158Right-handed 310
Helix 158
AR5
O
185 189Right-handed 310
Helix 159
AR6
O
201 204Right-handed 310
Helix 160
AR7
P
79 83Right-handed 310
Helix 161
AR8
P
121 127Right-handed alpha
Helix 162
AR9
P
183 187Right-handed alpha
Helix 163
AS1
Q
79 83Right-handed 310
Helix 164
AS2
Q
121 127Right-handed alpha
Helix 165
AS3
Q
182 187Right-handed alpha
Helix 166
AS4
R
79 83Right-handed 310
Helix 167
AS5
R
121 127Right-handed alpha
Helix 168
AS6
R
183 187Right-handed alpha
Helix 169
AS7
S
79 83Right-handed 310
Helix 170
AS8
S
121 127Right-handed alpha
Helix 171
AS9
S
183 187Right-handed alpha
Helix 172
AT1
T
79 83Right-handed 310
Helix 173
AT2
T
121 127Right-handed alpha
Helix 174
AT3
T
183 187Right-handed alpha
Helix 175
AT4
U
79 83Right-handed 310
Helix 176
AT5
U
121 127Right-handed alpha
Helix 177
AT6
U
183 187Right-handed alpha
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