Analysis of interatomic Contacts of Structural Units in PDB entry:
5UDH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UDH entry

There are 5 chains in PDB entry 5UDH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 98	TYR 554
C	SER 0	ARG 151
B	ASP 98	TRP 552
D	GLY -1	VAL 153
E	MET 1	LEU 73

There are 39 helices in PDB entry 5UDH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	106	125	Right-handed alpha
Helix 2	AA2	A	127	138	Right-handed alpha
Helix 3	AA3	A	141	150	Right-handed alpha
Helix 4	AA4	A	153	162	Right-handed alpha
Helix 5	AA5	A	194	196	Right-handed 310
Helix 6	AA6	A	209	220	Right-handed alpha
Helix 7	AA7	A	241	249	Right-handed alpha
Helix 8	AA8	A	251	269	Right-handed alpha
Helix 9	AA9	A	316	326	Right-handed alpha
Helix 10	AB1	A	411	433	Right-handed alpha
Helix 11	AB2	A	433	445	Right-handed alpha
Helix 12	AB3	A	452	481	Right-handed alpha
Helix 13	AB4	A	485	511	Right-handed alpha
Helix 14	AB5	A	520	549	Right-handed alpha
Helix 15	AB6	C	1	18	Right-handed alpha
Helix 16	AB7	C	87	91	Right-handed 310
Helix 17	AB8	C	100	114	Right-handed alpha
Helix 18	AB9	C	122	132	Right-handed alpha
Helix 19	AC1	C	132	148	Right-handed alpha
Helix 20	AC2	B	106	125	Right-handed alpha
Helix 21	AC3	B	127	138	Right-handed alpha
Helix 22	AC4	B	141	150	Right-handed alpha
Helix 23	AC5	B	194	196	Right-handed 310
Helix 24	AC6	B	209	220	Right-handed alpha
Helix 25	AC7	B	241	247	Right-handed alpha
Helix 26	AC8	B	251	262	Right-handed alpha
Helix 27	AC9	B	263	269	Right-handed alpha
Helix 28	AD1	B	316	327	Right-handed alpha
Helix 29	AD2	B	410	433	Right-handed alpha
Helix 30	AD3	B	434	439	Right-handed alpha
Helix 31	AD4	B	458	481	Right-handed alpha
Helix 32	AD5	B	486	511	Right-handed alpha
Helix 33	AD6	B	520	550	Right-handed alpha
Helix 34	AD7	D	0	18	Right-handed alpha
Helix 35	AD8	D	45	49	Right-handed 310
Helix 36	AD9	D	100	114	Right-handed alpha
Helix 37	AE1	D	122	132	Right-handed alpha
Helix 38	AE2	D	132	148	Right-handed alpha
Helix 39	AE3	E	22	35	Right-handed alpha

There are 14 sheets in PDB entry 5UDH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	105	first strand
Strand 2	A	283	287	anti-parallel
Strand 3	A	273	275	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	200	first strand
Strand 2	A	206	208	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	230	first strand
Strand 2	A	239	240	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	296	first strand
Strand 2	A	302	304	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	343	first strand
Strand 2	A	350	352	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	361	first strand
Strand 2	A	370	372	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	27	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	C	51	54	anti-parallel
Strand 4	C	69	70	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	105	first strand
Strand 2	B	283	287	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	206	208	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	296	first strand
Strand 2	B	302	304	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	343	first strand
Strand 2	B	350	352	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	B	370	372	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	23	first strand
Strand 2	D	34	39	anti-parallel
Strand 3	D	51	56	anti-parallel
Strand 4	D	67	70	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	16	first strand
Strand 2	E	2	6	anti-parallel
Strand 3	E	66	69	parallel
Strand 4	E	43	45	anti-parallel
Strand 5	E	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UDH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UDH