Analysis of interatomic Contacts of Structural Units in PDB entry:
5UDO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UDO entry

There are 8 chains in PDB entry 5UDO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 352ALA 399
B
 LEU 351ALA 399
C
 SER 350TYR 393
D
 SER 350ILE 397
E
 LEU 351ILE 397
F
 SER 350ILE 397
G
 ASN 352TYR 393
H
 ASN 352ALA 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5UDO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
355 368Right-handed alpha
Helix 2
AA2
A
375 395Right-handed alpha
Helix 3
AA3
B
352 371Right-handed alpha
Helix 4
AA4
B
375 393Right-handed alpha
Helix 5
AA5
C
351 371Right-handed alpha
Helix 6
AA6
C
376 391Right-handed alpha
Helix 7
AA7
D
351 371Right-handed alpha
Helix 8
AA8
D
375 397Right-handed alpha
Helix 9
AA9
E
352 368Right-handed alpha
Helix 10
AB1
E
375 393Right-handed alpha
Helix 11
AB2
F
352 371Right-handed alpha
Helix 12
AB3
F
375 397Right-handed alpha
Helix 13
AB4
G
353 370Right-handed alpha
Helix 14
AB5
G
375 392Right-handed alpha
Helix 15
AB6
H
353 371Right-handed alpha
Helix 16
AB7
H
375 399Right-handed alpha
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There are no sheets in PDB entry 5UDO
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il