Analysis of interatomic Contacts of Structural Units in PDB entry:
5UDR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UDR entry

There are 6 chains in PDB entry 5UDR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	PHE 275
B	ALA 2	SER 260
C	ALA 2	ARG 259
D	ALA 9	ARG 259
E	ALA 2	TRP 279
F	ALA 2	SER 260

There are 78 helices in PDB entry 5UDR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	19	Right-handed alpha
Helix 2	AA2	A	28	43	Right-handed alpha
Helix 3	AA3	A	58	72	Right-handed alpha
Helix 4	AA4	A	82	85	Right-handed 310
Helix 5	AA5	A	86	91	Right-handed alpha
Helix 6	AA6	A	95	116	Right-handed alpha
Helix 7	AA7	A	146	151	Right-handed alpha
Helix 8	AA8	A	154	165	Right-handed alpha
Helix 9	AA9	A	177	182	Right-handed 310
Helix 10	AB1	A	189	206	Right-handed alpha
Helix 11	AB2	A	225	233	Right-handed alpha
Helix 12	AB3	A	235	246	Right-handed alpha
Helix 13	AB4	A	265	275	Right-handed alpha
Helix 14	AB5	B	3	19	Right-handed alpha
Helix 15	AB6	B	28	43	Right-handed alpha
Helix 16	AB7	B	58	72	Right-handed alpha
Helix 17	AB8	B	82	85	Right-handed 310
Helix 18	AB9	B	86	91	Right-handed alpha
Helix 19	AC1	B	95	116	Right-handed alpha
Helix 20	AC2	B	146	151	Right-handed alpha
Helix 21	AC3	B	154	165	Right-handed alpha
Helix 22	AC4	B	177	182	Right-handed 310
Helix 23	AC5	B	189	206	Right-handed alpha
Helix 24	AC6	B	225	233	Right-handed alpha
Helix 25	AC7	B	235	246	Right-handed alpha
Helix 26	AC8	C	3	19	Right-handed alpha
Helix 27	AC9	C	28	43	Right-handed alpha
Helix 28	AD1	C	58	72	Right-handed alpha
Helix 29	AD2	C	82	85	Right-handed 310
Helix 30	AD3	C	86	91	Right-handed alpha
Helix 31	AD4	C	95	116	Right-handed alpha
Helix 32	AD5	C	146	151	Right-handed alpha
Helix 33	AD6	C	154	165	Right-handed alpha
Helix 34	AD7	C	177	182	Right-handed 310
Helix 35	AD8	C	189	206	Right-handed alpha
Helix 36	AD9	C	225	233	Right-handed alpha
Helix 37	AE1	C	235	246	Right-handed alpha
Helix 38	AE2	D	10	19	Right-handed alpha
Helix 39	AE3	D	28	43	Right-handed alpha
Helix 40	AE4	D	58	72	Right-handed alpha
Helix 41	AE5	D	82	85	Right-handed 310
Helix 42	AE6	D	86	91	Right-handed alpha
Helix 43	AE7	D	95	116	Right-handed alpha
Helix 44	AE8	D	146	151	Right-handed alpha
Helix 45	AE9	D	154	165	Right-handed alpha
Helix 46	AF1	D	177	182	Right-handed 310
Helix 47	AF2	D	189	206	Right-handed alpha
Helix 48	AF3	D	225	227	Right-handed 310
Helix 49	AF4	D	228	233	Right-handed alpha
Helix 50	AF5	D	235	246	Right-handed alpha
Helix 51	AF6	E	3	19	Right-handed alpha
Helix 52	AF7	E	28	43	Right-handed alpha
Helix 53	AF8	E	58	72	Right-handed alpha
Helix 54	AF9	E	82	85	Right-handed 310
Helix 55	AG1	E	86	91	Right-handed alpha
Helix 56	AG2	E	95	115	Right-handed alpha
Helix 57	AG3	E	146	151	Right-handed alpha
Helix 58	AG4	E	154	165	Right-handed alpha
Helix 59	AG5	E	177	182	Right-handed 310
Helix 60	AG6	E	189	206	Right-handed alpha
Helix 61	AG7	E	225	227	Right-handed 310
Helix 62	AG8	E	228	233	Right-handed alpha
Helix 63	AG9	E	235	246	Right-handed alpha
Helix 64	AH1	E	265	277	Right-handed alpha
Helix 65	AH2	F	3	19	Right-handed alpha
Helix 66	AH3	F	28	43	Right-handed alpha
Helix 67	AH4	F	58	72	Right-handed alpha
Helix 68	AH5	F	82	85	Right-handed 310
Helix 69	AH6	F	86	91	Right-handed alpha
Helix 70	AH7	F	95	116	Right-handed alpha
Helix 71	AH8	F	138	143	Right-handed alpha
Helix 72	AH9	F	146	151	Right-handed alpha
Helix 73	AI1	F	154	166	Right-handed alpha
Helix 74	AI2	F	177	182	Right-handed 310
Helix 75	AI3	F	189	206	Right-handed alpha
Helix 76	AI4	F	225	227	Right-handed 310
Helix 77	AI5	F	228	233	Right-handed alpha
Helix 78	AI6	F	235	246	Right-handed alpha

There are 9 sheets in PDB entry 5UDR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	80	first strand
Strand 2	A	47	53	parallel
Strand 3	A	21	24	parallel
Strand 4	A	119	121	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	216	first strand
Strand 2	A	219	223	anti-parallel
Strand 3	A	250	254	parallel
Strand 4	F	250	254	anti-parallel
Strand 5	F	219	223	parallel
Strand 6	F	212	216	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	80	first strand
Strand 2	B	47	53	parallel
Strand 3	B	21	24	parallel
Strand 4	B	119	121	parallel
Strand 5	B	144	145	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	216	first strand
Strand 2	B	219	223	anti-parallel
Strand 3	B	250	254	parallel
Strand 4	D	250	254	anti-parallel
Strand 5	D	219	223	parallel
Strand 6	D	212	216	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	80	first strand
Strand 2	C	47	53	parallel
Strand 3	C	21	24	parallel
Strand 4	C	119	121	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	216	first strand
Strand 2	C	219	223	anti-parallel
Strand 3	C	250	254	parallel
Strand 4	E	250	254	anti-parallel
Strand 5	E	219	223	parallel
Strand 6	E	212	216	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	80	first strand
Strand 2	D	47	53	parallel
Strand 3	D	21	24	parallel
Strand 4	D	120	121	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	81	first strand
Strand 2	E	47	54	parallel
Strand 3	E	21	24	parallel
Strand 4	E	119	121	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	80	first strand
Strand 2	F	47	53	parallel
Strand 3	F	21	24	parallel
Strand 4	F	119	121	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UDR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UDR