Analysis of interatomic Contacts of Structural Units in PDB entry:
5UDU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UDU entry

There are 6 chains in PDB entry 5UDU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ALA 276
B	ALA 2	ARG 259
C	ALA 2	ARG 259
D	ALA 2	ARG 259
E	ALA 2	SER 280
F	ALA 2	THR 48

There are 80 helices in PDB entry 5UDU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	19	Right-handed alpha
Helix 2	AA2	A	28	43	Right-handed alpha
Helix 3	AA3	A	58	73	Right-handed alpha
Helix 4	AA4	A	82	85	Right-handed 310
Helix 5	AA5	A	86	91	Right-handed alpha
Helix 6	AA6	A	95	116	Right-handed alpha
Helix 7	AA7	A	137	143	Right-handed alpha
Helix 8	AA8	A	146	151	Right-handed alpha
Helix 9	AA9	A	154	165	Right-handed alpha
Helix 10	AB1	A	177	182	Right-handed 310
Helix 11	AB2	A	189	206	Right-handed alpha
Helix 12	AB3	A	225	227	Right-handed 310
Helix 13	AB4	A	228	233	Right-handed alpha
Helix 14	AB5	A	235	246	Right-handed alpha
Helix 15	AB6	A	265	275	Right-handed alpha
Helix 16	AB7	B	3	19	Right-handed alpha
Helix 17	AB8	B	28	43	Right-handed alpha
Helix 18	AB9	B	58	72	Right-handed alpha
Helix 19	AC1	B	82	85	Right-handed 310
Helix 20	AC2	B	86	91	Right-handed alpha
Helix 21	AC3	B	95	115	Right-handed alpha
Helix 22	AC4	B	146	151	Right-handed alpha
Helix 23	AC5	B	154	165	Right-handed alpha
Helix 24	AC6	B	177	182	Right-handed 310
Helix 25	AC7	B	189	206	Right-handed alpha
Helix 26	AC8	B	225	233	Right-handed alpha
Helix 27	AC9	B	235	246	Right-handed alpha
Helix 28	AD1	C	3	19	Right-handed alpha
Helix 29	AD2	C	28	43	Right-handed alpha
Helix 30	AD3	C	58	72	Right-handed alpha
Helix 31	AD4	C	82	85	Right-handed 310
Helix 32	AD5	C	86	91	Right-handed alpha
Helix 33	AD6	C	95	116	Right-handed alpha
Helix 34	AD7	C	137	142	Right-handed alpha
Helix 35	AD8	C	147	151	Right-handed alpha
Helix 36	AD9	C	154	165	Right-handed alpha
Helix 37	AE1	C	177	182	Right-handed 310
Helix 38	AE2	C	189	206	Right-handed alpha
Helix 39	AE3	C	225	227	Right-handed 310
Helix 40	AE4	C	228	233	Right-handed alpha
Helix 41	AE5	C	235	246	Right-handed alpha
Helix 42	AE6	D	3	19	Right-handed alpha
Helix 43	AE7	D	28	43	Right-handed alpha
Helix 44	AE8	D	58	72	Right-handed alpha
Helix 45	AE9	D	82	85	Right-handed 310
Helix 46	AF1	D	86	92	Right-handed alpha
Helix 47	AF2	D	95	115	Right-handed alpha
Helix 48	AF3	D	146	151	Right-handed alpha
Helix 49	AF4	D	154	165	Right-handed alpha
Helix 50	AF5	D	177	182	Right-handed 310
Helix 51	AF6	D	189	206	Right-handed alpha
Helix 52	AF7	D	225	233	Right-handed alpha
Helix 53	AF8	D	235	246	Right-handed alpha
Helix 54	AF9	E	3	19	Right-handed alpha
Helix 55	AG1	E	28	43	Right-handed alpha
Helix 56	AG2	E	58	72	Right-handed alpha
Helix 57	AG3	E	82	85	Right-handed 310
Helix 58	AG4	E	86	91	Right-handed alpha
Helix 59	AG5	E	95	115	Right-handed alpha
Helix 60	AG6	E	146	151	Right-handed alpha
Helix 61	AG7	E	154	165	Right-handed alpha
Helix 62	AG8	E	177	182	Right-handed 310
Helix 63	AG9	E	189	206	Right-handed alpha
Helix 64	AH1	E	225	233	Right-handed alpha
Helix 65	AH2	E	235	246	Right-handed alpha
Helix 66	AH3	E	265	277	Right-handed alpha
Helix 67	AH4	F	3	19	Right-handed alpha
Helix 68	AH5	F	28	43	Right-handed alpha
Helix 69	AH6	F	58	72	Right-handed alpha
Helix 70	AH7	F	82	85	Right-handed 310
Helix 71	AH8	F	86	91	Right-handed alpha
Helix 72	AH9	F	95	116	Right-handed alpha
Helix 73	AI1	F	138	143	Right-handed alpha
Helix 74	AI2	F	146	151	Right-handed alpha
Helix 75	AI3	F	154	165	Right-handed alpha
Helix 76	AI4	F	177	182	Right-handed 310
Helix 77	AI5	F	189	206	Right-handed alpha
Helix 78	AI6	F	225	227	Right-handed 310
Helix 79	AI7	F	228	233	Right-handed alpha
Helix 80	AI8	F	235	246	Right-handed alpha

There are 9 sheets in PDB entry 5UDU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	80	first strand
Strand 2	A	47	53	parallel
Strand 3	A	21	24	parallel
Strand 4	A	119	121	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	216	first strand
Strand 2	A	219	223	anti-parallel
Strand 3	A	250	254	parallel
Strand 4	F	250	254	anti-parallel
Strand 5	F	219	223	parallel
Strand 6	F	212	216	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	80	first strand
Strand 2	B	47	53	parallel
Strand 3	B	21	24	parallel
Strand 4	B	119	121	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	216	first strand
Strand 2	B	219	223	anti-parallel
Strand 3	B	250	254	parallel
Strand 4	D	250	254	anti-parallel
Strand 5	D	219	223	parallel
Strand 6	D	212	216	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	81	first strand
Strand 2	C	47	54	parallel
Strand 3	C	21	24	parallel
Strand 4	C	119	122	parallel
Strand 5	C	145	146	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	216	first strand
Strand 2	C	219	223	anti-parallel
Strand 3	C	250	254	parallel
Strand 4	E	250	254	anti-parallel
Strand 5	E	219	223	parallel
Strand 6	E	212	216	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	80	first strand
Strand 2	D	47	53	parallel
Strand 3	D	21	24	parallel
Strand 4	D	119	121	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	80	first strand
Strand 2	E	47	53	parallel
Strand 3	E	21	24	parallel
Strand 4	E	119	121	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	80	first strand
Strand 2	F	47	53	parallel
Strand 3	F	21	24	parallel
Strand 4	F	119	121	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UDU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UDU