Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 5UE0 entry
There are 5 chains in PDB entry 5UE0
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
|---|
A
|
SER 353 | ALA 445 |
A
|
VAL 447 | VAL 462 |
A
|
GLN 464 | TYR 489 |
A
|
THR 491 | GLN 578 |
A
|
LEU 580 | LEU 650 |
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There are 13
helices in PDB entry 5UE0. Click on helix of interest for
CSU analysis.
Helix
number
| Helix
ID | Chain
ID |
Initial
residue | Terminal
residue |
Helix class |
|---|
| Helix 1 |
AA1 | A
| 355 |
359 | Right-handed 310 |
| Helix 2 |
AA2 | A
| 360 |
376 | Right-handed alpha |
| Helix 3 |
AA3 | A
| 385 |
405 | Right-handed alpha |
| Helix 4 |
AA4 | A
| 411 |
427 | Right-handed alpha |
| Helix 5 |
AA5 | A
| 431 |
448 | Right-handed alpha |
| Helix 6 |
AA6 | A
| 451 |
470 | Right-handed alpha |
| Helix 7 |
AA7 | A
| 477 |
499 | Right-handed alpha |
| Helix 8 |
AA8 | A
| 500 |
516 | Right-handed alpha |
| Helix 9 |
AA9 | A
| 532 |
544 | Right-handed alpha |
| Helix 10 |
AB1 | A
| 547 |
568 | Right-handed alpha |
| Helix 11 |
AB2 | A
| 572 |
586 | Right-handed alpha |
| Helix 12 |
AB3 | A
| 599 |
614 | Right-handed alpha |
| Helix 13 |
AB4 | A
| 615 |
648 | Right-handed alpha |
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There are no sheets in PDB entry
5UE0
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il