Analysis of interatomic Contacts of Structural Units in PDB entry:
5UE8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UE8 entry

There is 1 chain in PDB entry 5UE8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 541LYS 1218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 5UE8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
543 559Right-handed alpha
Helix 2
AA2
A
589 593Right-handed 310
Helix 3
AA3
A
608 612Right-handed 310
Helix 4
AA4
A
615 628Right-handed alpha
Helix 5
AA5
A
629 651Right-handed alpha
Helix 6
AA6
A
652 662Right-handed alpha
Helix 7
AA7
A
665 681Right-handed alpha
Helix 8
AA8
A
827 844Right-handed alpha
Helix 9
AA9
A
871 881Right-handed alpha
Helix 10
AB1
A
885 898Right-handed alpha
Helix 11
AB2
A
899 901Right-handed 310
Helix 12
AB3
A
905 921Right-handed alpha
Helix 13
AB4
A
931 937Right-handed alpha
Helix 14
AB5
A
942 962Right-handed alpha
Helix 15
AB6
A
963 968Right-handed alpha
Helix 16
AB7
A
972 996Right-handed alpha
Helix 17
AB8
A
1004 1027Right-handed alpha
Helix 18
AB9
A
1027 1036Right-handed alpha
Helix 19
AC1
A
1058 1078Right-handed alpha
Helix 20
AC2
A
1078 1083Right-handed alpha
Helix 21
AC3
A
1091 1119Right-handed alpha
Helix 22
AC4
A
1122 1141Right-handed alpha
Helix 23
AC5
A
1144 1149Right-handed alpha
Helix 24
AC6
A
1154 1188Right-handed alpha
Helix 25
AC7
A
1200 1219Right-handed alpha
Helix 26
AC8
A
1223 1252Right-handed alpha
Helix 27
AC9
A
1263 1286Right-handed alpha
Helix 28
AD1
A
1287 1291Right-handed 310
Helix 29
AD2
A
1292 1320Right-handed alpha
Helix 30
AD3
A
1321 1337Right-handed alpha
Helix 31
AD4
A
1354 1376Right-handed alpha
Helix 32
AD5
A
1380 1399Right-handed alpha
Helix 33
AD6
A
1471 1488Right-handed alpha
Helix 34
AD7
A
1494 1500Right-handed alpha
Helix 35
AD8
A
1501 1512Right-handed alpha
Helix 36
AD9
B
543 559Right-handed alpha
Helix 37
AE1
B
589 593Right-handed 310
Helix 38
AE2
B
608 612Right-handed 310
Helix 39
AE3
B
615 625Right-handed alpha
Helix 40
AE4
B
632 651Right-handed alpha
Helix 41
AE5
B
652 662Right-handed alpha
Helix 42
AE6
B
665 681Right-handed alpha
Helix 43
AE7
B
786 788Right-handed 310
Helix 44
AE8
B
827 844Right-handed alpha
Helix 45
AE9
B
871 883Right-handed alpha
Helix 46
AF1
B
885 898Right-handed alpha
Helix 47
AF2
B
899 901Right-handed 310
Helix 48
AF3
B
905 919Right-handed alpha
Helix 49
AF4
B
932 938Right-handed alpha
Helix 50
AF5
B
942 962Right-handed alpha
Helix 51
AF6
B
963 968Right-handed alpha
Helix 52
AF7
B
972 996Right-handed alpha
Helix 53
AF8
B
1004 1026Right-handed alpha
Helix 54
AF9
B
1027 1036Right-handed alpha
Helix 55
AG1
B
1058 1078Right-handed alpha
Helix 56
AG2
B
1078 1083Right-handed alpha
Helix 57
AG3
B
1091 1119Right-handed alpha
Helix 58
AG4
B
1122 1141Right-handed alpha
Helix 59
AG5
B
1153 1188Right-handed alpha
Helix 60
AG6
B
1200 1218Right-handed alpha
Helix 61
AG7
B
1223 1252Right-handed alpha
Helix 62
AG8
B
1253 1257Right-handed 310
Helix 63
AG9
B
1263 1286Right-handed alpha
Helix 64
AH1
B
1287 1291Right-handed 310
Helix 65
AH2
B
1292 1320Right-handed alpha
Helix 66
AH3
B
1321 1337Right-handed alpha
Helix 67
AH4
B
1354 1379Right-handed alpha
Helix 68
AH5
B
1380 1403Right-handed alpha
Helix 69
AH6
B
1469 1488Right-handed alpha
Helix 70
AH7
B
1494 1500Right-handed alpha
Helix 71
AH8
B
1501 1515Right-handed alpha
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There are 8 sheets in PDB entry 5UE8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
569 572first strand
Strand 2
A
594 597anti-parallel
Strand 3
A
603 604anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
578 579first strand
Strand 2
A
586 587anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
735 743first strand
Strand 2
A
690 699anti-parallel
Strand 3
A
810 818anti-parallel
Strand 4
A
791 797anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
721 724first strand
Strand 2
A
712 718anti-parallel
Strand 3
A
751 757anti-parallel
Strand 4
A
776 783anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
569 572first strand
Strand 2
B
594 597anti-parallel
Strand 3
B
603 604anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
578 579first strand
Strand 2
B
586 587anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
735 742first strand
Strand 2
B
690 699anti-parallel
Strand 3
B
810 818anti-parallel
Strand 4
B
791 797anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
721 724first strand
Strand 2
B
712 718anti-parallel
Strand 3
B
750 757anti-parallel
Strand 4
B
776 784anti-parallel
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