Analysis of interatomic Contacts of Structural Units in PDB entry:
5UEJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UEJ entry

There are 2 chains in PDB entry 5UEJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	ALA 377
B	THR 2	ALA 377

There are 22 helices in PDB entry 5UEJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	15	Right-handed alpha
Helix 2	AA2	A	25	36	Right-handed alpha
Helix 3	AA3	A	76	80	Right-handed 310
Helix 4	AA4	A	102	120	Right-handed alpha
Helix 5	AA5	A	142	153	Right-handed alpha
Helix 6	AA6	A	198	202	Right-handed 310
Helix 7	AA7	A	204	219	Right-handed alpha
Helix 8	AA8	A	265	280	Right-handed alpha
Helix 9	AA9	A	300	315	Right-handed alpha
Helix 10	AB1	A	328	333	Right-handed alpha
Helix 11	AB2	A	359	377	Right-handed alpha
Helix 12	AB3	B	4	15	Right-handed alpha
Helix 13	AB4	B	25	36	Right-handed alpha
Helix 14	AB5	B	76	80	Right-handed 310
Helix 15	AB6	B	102	120	Right-handed alpha
Helix 16	AB7	B	142	153	Right-handed alpha
Helix 17	AB8	B	198	202	Right-handed 310
Helix 18	AB9	B	204	219	Right-handed alpha
Helix 19	AC1	B	265	280	Right-handed alpha
Helix 20	AC2	B	300	315	Right-handed alpha
Helix 21	AC3	B	328	333	Right-handed alpha
Helix 22	AC4	B	359	377	Right-handed alpha

There are 11 sheets in PDB entry 5UEJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	51	56	anti-parallel
Strand 3	A	126	132	anti-parallel
Strand 4	A	62	68	parallel
Strand 5	A	157	162	parallel
Strand 6	A	336	341	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	90	first strand
Strand 2	A	93	95	anti-parallel
Strand 3	A	355	357	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	176	first strand
Strand 2	A	319	321	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	179	first strand
Strand 2	A	295	296	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	292	first strand
Strand 2	A	181	190	anti-parallel
Strand 3	A	251	260	anti-parallel
Strand 4	A	232	240	anti-parallel
Strand 5	B	232	240	anti-parallel
Strand 6	B	251	260	anti-parallel
Strand 7	B	181	190	anti-parallel
Strand 8	B	284	292	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	247	248	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	46	first strand
Strand 2	B	49	56	anti-parallel
Strand 3	B	126	132	anti-parallel
Strand 4	B	62	68	parallel
Strand 5	B	157	162	parallel
Strand 6	B	336	341	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	93	95	anti-parallel
Strand 3	B	355	357	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	176	first strand
Strand 2	B	319	321	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	179	first strand
Strand 2	B	295	296	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	195	first strand
Strand 2	B	247	248	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UEJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UEJ