Analysis of interatomic Contacts of Structural Units in PDB entry:
5UF2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UF2 entry

There is 1 chain in PDB entry 5UF2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0GLN 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5UF2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 16Right-handed alpha
Helix 2
AA2
A
17 19Right-handed 310
Helix 3
AA3
A
30 44Right-handed alpha
Helix 4
AA4
A
54 64Right-handed alpha
Helix 5
AA5
A
70 74Right-handed 310
Helix 6
AA6
A
100 110Right-handed alpha
Helix 7
AA7
A
121 123Right-handed 310
Helix 8
AA8
A
140 152Right-handed alpha
Helix 9
AA9
A
179 189Right-handed alpha
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There are 3 sheets in PDB entry 5UF2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
24 27parallel
Strand 3
A
79 82parallel
Strand 4
A
114 119parallel
Strand 5
A
206 211parallel
Strand 6
A
214 218anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
93 94anti-parallel
Strand 3
A
198 199anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 157first strand
Strand 2
A
168 173anti-parallel
Strand 3
A
132 136anti-parallel
Strand 4
A
193 196anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il