Analysis of interatomic Contacts of Structural Units in PDB entry:
5UF4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UF4 entry

There are 3 chains in PDB entry 5UF4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 22PRO 262
B
 CYS 22PRO 262
C
 CYS 22PRO 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 5UF4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
163 167Right-handed 310
Helix 2
AA2
A
208 210Right-handed 310
Helix 3
AA3
A
211 221Right-handed alpha
Helix 4
AA4
A
247 251Right-handed 310
Helix 5
AA5
A
252 256Right-handed 310
Helix 6
AA6
A
257 261Right-handed 310
Helix 7
AA7
B
163 167Right-handed 310
Helix 8
AA8
B
208 210Right-handed 310
Helix 9
AA9
B
211 221Right-handed alpha
Helix 10
AB1
B
236 239Right-handed 310
Helix 11
AB2
B
247 251Right-handed 310
Helix 12
AB3
B
252 256Right-handed 310
Helix 13
AB4
B
257 261Right-handed 310
Helix 14
AB5
C
163 167Right-handed 310
Helix 15
AB6
C
208 210Right-handed 310
Helix 16
AB7
C
211 221Right-handed alpha
Helix 17
AB8
C
236 239Right-handed 310
Helix 18
AB9
C
247 251Right-handed 310
Helix 19
AC1
C
252 256Right-handed 310
Helix 20
AC2
C
257 261Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 5UF4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
32 34anti-parallel
Strand 3
A
53 55parallel
Strand 4
A
77 79parallel
Strand 5
A
101 103parallel
Strand 6
A
125 127parallel
Strand 7
A
149 151parallel
Strand 8
A
172 174parallel
Strand 9
A
196 198parallel
Strand 10
A
225 228parallel
Strand 11
A
232 234anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
32 34anti-parallel
Strand 3
B
53 55parallel
Strand 4
B
77 79parallel
Strand 5
B
101 103parallel
Strand 6
B
125 127parallel
Strand 7
B
149 151parallel
Strand 8
B
172 174parallel
Strand 9
B
196 198parallel
Strand 10
B
225 228parallel
Strand 11
B
232 234anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 29first strand
Strand 2
C
32 34anti-parallel
Strand 3
C
53 55parallel
Strand 4
C
77 79parallel
Strand 5
C
101 103parallel
Strand 6
C
125 127parallel
Strand 7
C
149 151parallel
Strand 8
C
172 174parallel
Strand 9
C
196 198parallel
Strand 10
C
225 228parallel
Strand 11
C
232 234anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il