Analysis of interatomic Contacts of Structural Units in PDB entry:
5UFA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UFA entry

There are 3 chains in PDB entry 5UFA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6PHE 259
B
 GLU 6PHE 259
C
 GLU 6PHE 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5UFA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 88Right-handed alpha
Helix 2
AA2
A
105 109Right-handed 310
Helix 3
AA3
A
124 131Right-handed alpha
Helix 4
AA4
A
133 140Right-handed alpha
Helix 5
AA5
A
151 155Right-handed 310
Helix 6
AA6
A
157 166Right-handed alpha
Helix 7
AA7
A
196 203Right-handed alpha
Helix 8
AA8
A
204 211Right-handed alpha
Helix 9
AA9
A
226 240Right-handed alpha
Helix 10
AB1
B
79 88Right-handed alpha
Helix 11
AB2
B
105 109Right-handed 310
Helix 12
AB3
B
124 131Right-handed alpha
Helix 13
AB4
B
133 140Right-handed alpha
Helix 14
AB5
B
151 155Right-handed 310
Helix 15
AB6
B
157 165Right-handed alpha
Helix 16
AB7
B
196 203Right-handed alpha
Helix 17
AB8
B
204 211Right-handed alpha
Helix 18
AB9
B
226 240Right-handed alpha
Helix 19
AC1
C
79 88Right-handed alpha
Helix 20
AC2
C
105 109Right-handed 310
Helix 21
AC3
C
124 131Right-handed alpha
Helix 22
AC4
C
133 140Right-handed alpha
Helix 23
AC5
C
151 155Right-handed 310
Helix 24
AC6
C
157 166Right-handed alpha
Helix 25
AC7
C
196 203Right-handed alpha
Helix 26
AC8
C
204 211Right-handed alpha
Helix 27
AC9
C
226 240Right-handed alpha
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There are 6 sheets in PDB entry 5UFA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 59first strand
Strand 2
A
42 49anti-parallel
Strand 3
A
93 97anti-parallel
Strand 4
A
9 19anti-parallel
Strand 5
A
24 30anti-parallel
Strand 6
A
68 74anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
176 183parallel
Strand 3
A
142 149parallel
Strand 4
A
114 120parallel
Strand 5
A
219 225parallel
Strand 6
A
253 257parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 59first strand
Strand 2
B
42 49anti-parallel
Strand 3
B
93 97anti-parallel
Strand 4
B
9 19anti-parallel
Strand 5
B
24 30anti-parallel
Strand 6
B
68 74anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 193first strand
Strand 2
B
176 183parallel
Strand 3
B
142 149parallel
Strand 4
B
114 120parallel
Strand 5
B
219 225parallel
Strand 6
B
253 257parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 59first strand
Strand 2
C
42 49anti-parallel
Strand 3
C
93 97anti-parallel
Strand 4
C
9 19anti-parallel
Strand 5
C
24 30anti-parallel
Strand 6
C
68 74anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
192 193first strand
Strand 2
C
176 183parallel
Strand 3
C
142 149parallel
Strand 4
C
114 120parallel
Strand 5
C
219 225parallel
Strand 6
C
253 257parallel
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