Analysis of interatomic Contacts of Structural Units in PDB entry:
5UFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UFD entry

There are 2 chains in PDB entry 5UFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 10PRO 238
B
 ASP 11PRO 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5UFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
139 143Right-handed 310
Helix 2
AA2
A
184 186Right-handed 310
Helix 3
AA3
A
187 197Right-handed alpha
Helix 4
AA4
A
223 227Right-handed 310
Helix 5
AA5
A
228 232Right-handed 310
Helix 6
AA6
A
233 237Right-handed 310
Helix 7
AA7
B
139 143Right-handed 310
Helix 8
AA8
B
184 186Right-handed 310
Helix 9
AA9
B
187 197Right-handed alpha
Helix 10
AB1
B
223 227Right-handed 310
Helix 11
AB2
B
228 232Right-handed 310
Helix 12
AB3
B
233 237Right-handed 310
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There are 2 sheets in PDB entry 5UFD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
32 34anti-parallel
Strand 3
A
53 55parallel
Strand 4
A
77 79parallel
Strand 5
A
101 103parallel
Strand 6
A
125 127parallel
Strand 7
A
148 150parallel
Strand 8
A
172 174parallel
Strand 9
A
201 204parallel
Strand 10
A
208 210anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
32 34anti-parallel
Strand 3
B
53 55parallel
Strand 4
B
77 79parallel
Strand 5
B
101 103parallel
Strand 6
B
125 127parallel
Strand 7
B
148 150parallel
Strand 8
B
172 174parallel
Strand 9
B
201 204parallel
Strand 10
B
208 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il