Analysis of interatomic Contacts of Structural Units in PDB entry:
5UFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UFM entry

There are 2 chains in PDB entry 5UFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4ASP 228
B
 PRO 6ASP 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5UFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 43Right-handed alpha
Helix 2
AA2
A
50 53Right-handed 310
Helix 3
AA3
A
54 65Right-handed alpha
Helix 4
AA4
A
78 87Right-handed alpha
Helix 5
AA5
A
101 110Right-handed alpha
Helix 6
AA6
A
119 123Right-handed 310
Helix 7
AA7
A
137 141Right-handed 310
Helix 8
AA8
A
142 144Right-handed 310
Helix 9
AA9
A
145 156Right-handed alpha
Helix 10
AB1
A
189 200Right-handed alpha
Helix 11
AB2
B
24 43Right-handed alpha
Helix 12
AB3
B
50 53Right-handed 310
Helix 13
AB4
B
54 63Right-handed alpha
Helix 14
AB5
B
78 86Right-handed alpha
Helix 15
AB6
B
101 110Right-handed alpha
Helix 16
AB7
B
119 123Right-handed 310
Helix 17
AB8
B
137 141Right-handed 310
Helix 18
AB9
B
142 144Right-handed 310
Helix 19
AC1
B
145 156Right-handed alpha
Helix 20
AC2
B
189 200Right-handed alpha
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There are 4 sheets in PDB entry 5UFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
14 17anti-parallel
Strand 3
A
176 178anti-parallel
Strand 4
A
184 188anti-parallel
Strand 5
A
157 169parallel
Strand 6
A
129 135parallel
Strand 7
A
69 73parallel
Strand 8
A
90 94parallel
Strand 9
A
113 116parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
14 17anti-parallel
Strand 3
A
176 178anti-parallel
Strand 4
A
184 188anti-parallel
Strand 5
A
157 169parallel
Strand 6
A
217 226anti-parallel
Strand 7
A
202 212anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
B
14 17anti-parallel
Strand 3
B
176 178anti-parallel
Strand 4
B
184 188anti-parallel
Strand 5
B
157 169parallel
Strand 6
B
129 135parallel
Strand 7
B
69 73parallel
Strand 8
B
90 95parallel
Strand 9
B
113 117parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
B
14 17anti-parallel
Strand 3
B
176 178anti-parallel
Strand 4
B
184 188anti-parallel
Strand 5
B
157 169parallel
Strand 6
B
217 226anti-parallel
Strand 7
B
202 212anti-parallel
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