Analysis of interatomic Contacts of Structural Units in PDB entry:
5UFV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UFV entry

There are 6 chains in PDB entry 5UFV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	THR 228
B	GLY 2	THR 228
C	GLY 2	THR 228
D	GLY 2	THR 228
E	GLY 2	THR 228
F	GLY 2	ALA 183

There are 23 helices in PDB entry 5UFV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	47	Right-handed 310
Helix 2	AA2	A	90	94	Right-handed 310
Helix 3	AA3	A	126	132	Right-handed 310
Helix 4	AA4	A	186	188	Right-handed 310
Helix 5	AA5	B	43	47	Right-handed 310
Helix 6	AA6	B	126	132	Right-handed 310
Helix 7	AA7	B	186	188	Right-handed 310
Helix 8	AA8	C	43	47	Right-handed 310
Helix 9	AA9	C	90	94	Right-handed 310
Helix 10	AB1	C	126	132	Right-handed 310
Helix 11	AB2	C	186	188	Right-handed 310
Helix 12	AB3	D	43	47	Right-handed 310
Helix 13	AB4	D	90	94	Right-handed 310
Helix 14	AB5	D	126	132	Right-handed 310
Helix 15	AB6	D	186	188	Right-handed 310
Helix 16	AB7	E	43	47	Right-handed 310
Helix 17	AB8	E	90	94	Right-handed 310
Helix 18	AB9	E	126	132	Right-handed 310
Helix 19	AC1	E	186	188	Right-handed 310
Helix 20	AC2	F	43	47	Right-handed 310
Helix 21	AC3	F	90	94	Right-handed 310
Helix 22	AC4	F	126	132	Right-handed 310
Helix 23	AC5	F	186	188	Right-handed 310

There are 12 sheets in PDB entry 5UFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	15	first strand
Strand 2	A	2	9	anti-parallel
Strand 3	A	65	73	anti-parallel
Strand 4	A	136	141	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	167	177	parallel
Strand 3	A	149	159	anti-parallel
Strand 4	A	80	86	anti-parallel
Strand 5	A	101	107	anti-parallel
Strand 6	A	190	191	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	15	first strand
Strand 2	B	4	9	anti-parallel
Strand 3	B	65	70	anti-parallel
Strand 4	B	136	141	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	167	177	parallel
Strand 3	B	149	159	anti-parallel
Strand 4	B	80	86	anti-parallel
Strand 5	B	101	107	anti-parallel
Strand 6	B	190	191	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	15	first strand
Strand 2	C	2	9	anti-parallel
Strand 3	C	65	73	anti-parallel
Strand 4	C	136	141	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	167	177	parallel
Strand 3	C	149	159	anti-parallel
Strand 4	C	80	86	anti-parallel
Strand 5	C	101	107	anti-parallel
Strand 6	C	190	191	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	15	first strand
Strand 2	D	4	9	anti-parallel
Strand 3	D	65	70	anti-parallel
Strand 4	D	136	141	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	167	177	parallel
Strand 3	D	149	159	anti-parallel
Strand 4	D	80	86	anti-parallel
Strand 5	D	101	107	anti-parallel
Strand 6	D	190	191	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	15	first strand
Strand 2	E	2	9	anti-parallel
Strand 3	E	65	73	anti-parallel
Strand 4	E	136	141	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	167	177	parallel
Strand 3	E	149	159	anti-parallel
Strand 4	E	80	86	anti-parallel
Strand 5	E	101	107	anti-parallel
Strand 6	E	190	191	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	15	first strand
Strand 2	F	4	9	anti-parallel
Strand 3	F	65	70	anti-parallel
Strand 4	F	136	141	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	F	167	177	parallel
Strand 3	F	149	159	anti-parallel
Strand 4	F	80	86	anti-parallel
Strand 5	F	101	107	anti-parallel
Strand 6	F	190	191	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UFV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UFV