Analysis of interatomic Contacts of Structural Units in PDB entry:
5UGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UGM entry

There are 2 chains in PDB entry 5UGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 207TYR 477
B
 GLU 207TYR 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5UGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
207 226Right-handed alpha
Helix 2
AA2
A
229 238Right-handed alpha
Helix 3
AA3
A
251 262Right-handed alpha
Helix 4
AA4
A
269 273Right-handed 310
Helix 5
AA5
A
276 302Right-handed alpha
Helix 6
AA6
A
310 333Right-handed alpha
Helix 7
AA7
A
350 355Right-handed alpha
Helix 8
AA8
A
359 376Right-handed alpha
Helix 9
AA9
A
380 393Right-handed alpha
Helix 10
AB1
A
402 425Right-handed alpha
Helix 11
AB2
A
430 459Right-handed alpha
Helix 12
AB3
A
466 474Right-handed alpha
Helix 13
AB4
B
208 226Right-handed alpha
Helix 14
AB5
B
229 238Right-handed alpha
Helix 15
AB6
B
251 262Right-handed alpha
Helix 16
AB7
B
269 273Right-handed 310
Helix 17
AB8
B
276 302Right-handed alpha
Helix 18
AB9
B
310 332Right-handed alpha
Helix 19
AC1
B
350 355Right-handed alpha
Helix 20
AC2
B
356 363Right-handed 310
Helix 21
AC3
B
364 376Right-handed alpha
Helix 22
AC4
B
380 393Right-handed alpha
Helix 23
AC5
B
402 425Right-handed alpha
Helix 24
AC6
B
430 460Right-handed alpha
Helix 25
AC7
B
466 474Right-handed alpha
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There are 2 sheets in PDB entry 5UGM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
346 349parallel
Strand 3
A
338 341anti-parallel
Strand 4
A
334 335anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 249first strand
Strand 2
B
346 349parallel
Strand 3
B
338 341anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il