Analysis of interatomic Contacts of Structural Units in PDB entry:
5UGR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UGR entry

There is 1 chain in PDB entry 5UGR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5UGR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 33Right-handed alpha
Helix 2
AA2
A
48 50Right-handed 310
Helix 3
AA3
A
51 66Right-handed alpha
Helix 4
AA4
A
84 96Right-handed alpha
Helix 5
AA5
A
109 128Right-handed alpha
Helix 6
AA6
A
141 147Right-handed alpha
Helix 7
AA7
A
147 152Right-handed alpha
Helix 8
AA8
A
164 173Right-handed alpha
Helix 9
AA9
A
206 221Right-handed alpha
Helix 10
AB1
A
234 249Right-handed alpha
Helix 11
AB2
A
259 269Right-handed alpha
Helix 12
AB3
A
271 292Right-handed alpha
Helix 13
AB4
A
304 323Right-handed alpha
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There are 3 sheets in PDB entry 5UGR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 21first strand
Strand 2
A
38 42parallel
Strand 3
A
72 76parallel
Strand 4
A
101 104parallel
Strand 5
A
134 139parallel
Strand 6
A
158 163parallel
Strand 7
A
223 226parallel
Strand 8
A
252 255parallel
Strand 9
A
16 21parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 189first strand
Strand 2
A
200 202anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 298first strand
Strand 2
A
301 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il