Analysis of interatomic Contacts of Structural Units in PDB entry:
5UGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UGV entry

There are 2 chains in PDB entry 5UGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LEU 244
B
 GLY 0ASP 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5UGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
38 44Right-handed alpha
Helix 3
AA3
A
54 68Right-handed alpha
Helix 4
AA4
A
80 93Right-handed alpha
Helix 5
AA5
A
106 120Right-handed alpha
Helix 6
AA6
A
121 123Right-handed 310
Helix 7
AA7
A
141 155Right-handed alpha
Helix 8
AA8
A
217 228Right-handed alpha
Helix 9
AA9
A
229 231Right-handed 310
Helix 10
AB1
A
238 243Right-handed alpha
Helix 11
AB2
B
10 23Right-handed alpha
Helix 12
AB3
B
38 44Right-handed alpha
Helix 13
AB4
B
57 68Right-handed alpha
Helix 14
AB5
B
80 93Right-handed alpha
Helix 15
AB6
B
106 120Right-handed alpha
Helix 16
AB7
B
121 123Right-handed 310
Helix 17
AB8
B
141 155Right-handed alpha
Helix 18
AB9
B
217 228Right-handed alpha
Helix 19
AC1
B
229 231Right-handed 310
Helix 20
AC2
B
238 243Right-handed alpha
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There are 3 sheets in PDB entry 5UGV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 32first strand
Strand 2
A
1 6parallel
Strand 3
A
48 51parallel
Strand 4
A
71 74parallel
Strand 5
A
98 101parallel
Strand 6
A
233 236parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
180 186anti-parallel
Strand 3
A
125 132parallel
Strand 4
A
192 200anti-parallel
Strand 5
A
203 211anti-parallel
Strand 6
B
203 211anti-parallel
Strand 7
B
192 200anti-parallel
Strand 8
B
125 132anti-parallel
Strand 9
B
180 186parallel
Strand 10
B
175 177anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 32first strand
Strand 2
B
1 6parallel
Strand 3
B
48 51parallel
Strand 4
B
71 74parallel
Strand 5
B
98 101parallel
Strand 6
B
233 236parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il