Analysis of interatomic Contacts of Structural Units in PDB entry:
5UGZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UGZ entry

There are 2 chains in PDB entry 5UGZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLY 240
B
 SER 2GLY 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5UGZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 25Right-handed 310
Helix 2
AA2
A
40 44Right-handed 310
Helix 3
AA3
A
51 64Right-handed alpha
Helix 4
AA4
A
78 94Right-handed alpha
Helix 5
AA5
A
123 135Right-handed alpha
Helix 6
AA6
A
138 142Right-handed 310
Helix 7
AA7
A
144 164Right-handed alpha
Helix 8
AA8
A
190 201Right-handed 310
Helix 9
AA9
A
216 221Right-handed alpha
Helix 10
AB1
A
221 240Right-handed alpha
Helix 11
AB2
B
16 21Right-handed alpha
Helix 12
AB3
B
22 25Right-handed 310
Helix 13
AB4
B
40 44Right-handed 310
Helix 14
AB5
B
51 67Right-handed alpha
Helix 15
AB6
B
78 95Right-handed alpha
Helix 16
AB7
B
123 131Right-handed alpha
Helix 17
AB8
B
144 164Right-handed alpha
Helix 18
AB9
B
190 201Right-handed 310
Helix 19
AC1
B
216 221Right-handed alpha
Helix 20
AC2
B
221 240Right-handed alpha
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There are 2 sheets in PDB entry 5UGZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
4 9parallel
Strand 3
A
71 77parallel
Strand 4
A
101 105parallel
Strand 5
A
178 183parallel
Strand 6
A
205 210parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 34first strand
Strand 2
B
4 9parallel
Strand 3
B
71 77parallel
Strand 4
B
101 105parallel
Strand 5
B
178 183parallel
Strand 6
B
205 210parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il