Analysis of interatomic Contacts of Structural Units in PDB entry:
5UHD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UHD entry

There are 8 chains in PDB entry 5UHD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 3	ASN 226
B	ARG 6	ILE 232
C	SER 28	GLU 1153
D	ASP 3	ALA 1281
E	GLY 28	GLU 108
F	ASP 207	ASP 528
H	T 1	G 23
G	C 5	A 18

There are122 helices in PDB entry 5UHD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	46	Right-handed alpha
Helix 2	AA2	A	72	80	Right-handed alpha
Helix 3	AA3	A	81	83	Right-handed 310
Helix 4	AA4	A	108	110	Right-handed 310
Helix 5	AA5	A	148	156	Right-handed 310
Helix 6	AA6	A	203	220	Right-handed alpha
Helix 7	AA7	A	221	223	Right-handed 310
Helix 8	AA8	B	30	45	Right-handed alpha
Helix 9	AA9	B	72	82	Right-handed alpha
Helix 10	AB1	B	149	153	Right-handed 310
Helix 11	AB2	B	203	224	Right-handed alpha
Helix 12	AB3	C	54	66	Right-handed alpha
Helix 13	AB4	C	67	78	Right-handed alpha
Helix 14	AB5	C	84	94	Right-handed alpha
Helix 15	AB6	C	118	126	Right-handed alpha
Helix 16	AB7	C	234	242	Right-handed alpha
Helix 17	AB8	C	244	252	Right-handed alpha
Helix 18	AB9	C	255	264	Right-handed alpha
Helix 19	AC1	C	269	282	Right-handed alpha
Helix 20	AC2	C	291	299	Right-handed alpha
Helix 21	AC3	C	309	321	Right-handed alpha
Helix 22	AC4	C	334	350	Right-handed alpha
Helix 23	AC5	C	380	407	Right-handed alpha
Helix 24	AC6	C	408	412	Right-handed 310
Helix 25	AC7	C	413	418	Right-handed alpha
Helix 26	AC8	C	420	434	Right-handed alpha
Helix 27	AC9	C	444	452	Right-handed alpha
Helix 28	AD1	C	476	480	Right-handed 310
Helix 29	AD2	C	532	538	Right-handed alpha
Helix 30	AD3	C	564	566	Right-handed 310
Helix 31	AD4	C	582	586	Right-handed 310
Helix 32	AD5	C	590	594	Right-handed 310
Helix 33	AD6	C	596	600	Right-handed 310
Helix 34	AD7	C	601	613	Right-handed alpha
Helix 35	AD8	C	629	638	Right-handed alpha
Helix 36	AD9	C	739	744	Right-handed alpha
Helix 37	AE1	C	780	784	Right-handed 310
Helix 38	AE2	C	815	825	Right-handed alpha
Helix 39	AE3	C	900	904	Right-handed 310
Helix 40	AE4	C	918	922	Right-handed 310
Helix 41	AE5	C	928	943	Right-handed alpha
Helix 42	AE6	C	954	958	Right-handed 310
Helix 43	AE7	C	960	963	Right-handed 310
Helix 44	AE8	C	981	991	Right-handed alpha
Helix 45	AE9	C	1036	1041	Right-handed alpha
Helix 46	AF1	C	1069	1080	Right-handed alpha
Helix 47	AF2	C	1081	1090	Right-handed alpha
Helix 48	AF3	C	1095	1108	Right-handed alpha
Helix 49	AF4	C	1118	1130	Right-handed alpha
Helix 50	AF5	D	16	24	Right-handed alpha
Helix 51	AF6	D	84	90	Right-handed 310
Helix 52	AF7	D	104	107	Right-handed 310
Helix 53	AF8	D	112	118	Right-handed alpha
Helix 54	AF9	D	121	130	Right-handed alpha
Helix 55	AG1	D	140	147	Right-handed alpha
Helix 56	AG2	D	147	187	Right-handed alpha
Helix 57	AG3	D	190	193	Right-handed 310
Helix 58	AG4	D	194	228	Right-handed alpha
Helix 59	AG5	D	237	249	Right-handed alpha
Helix 60	AG6	D	257	267	Right-handed alpha
Helix 61	AG7	D	269	283	Right-handed alpha
Helix 62	AG8	D	285	305	Right-handed alpha
Helix 63	AG9	D	308	311	Right-handed 310
Helix 64	AH1	D	321	325	Right-handed 310
Helix 65	AH2	D	339	361	Right-handed alpha
Helix 66	AH3	D	363	383	Right-handed alpha
Helix 67	AH4	D	402	406	Right-handed 310
Helix 68	AH5	D	411	417	Right-handed alpha
Helix 69	AH6	D	445	452	Right-handed alpha
Helix 70	AH7	D	452	463	Right-handed alpha
Helix 71	AH8	D	468	479	Right-handed alpha
Helix 72	AH9	D	482	491	Right-handed alpha
Helix 73	AI1	D	505	507	Right-handed 310
Helix 74	AI2	D	528	533	Right-handed alpha
Helix 75	AI3	D	548	559	Right-handed alpha
Helix 76	AI4	D	579	589	Right-handed alpha
Helix 77	AI5	D	614	625	Right-handed alpha
Helix 78	AI6	D	643	652	Right-handed alpha
Helix 79	AI7	D	668	675	Right-handed alpha
Helix 80	AI8	D	689	703	Right-handed alpha
Helix 81	AI9	D	705	726	Right-handed alpha
Helix 82	AJ1	D	741	762	Right-handed alpha
Helix 83	AJ2	D	766	793	Right-handed alpha
Helix 84	AJ3	D	797	804	Right-handed alpha
Helix 85	AJ4	D	810	819	Right-handed alpha
Helix 86	AJ5	D	845	881	Right-handed alpha
Helix 87	AJ6	D	915	920	Right-handed alpha
Helix 88	AJ7	D	945	955	Right-handed alpha
Helix 89	AJ8	D	976	980	Right-handed alpha
Helix 90	AJ9	D	994	1005	Right-handed alpha
Helix 91	AK1	D	1027	1036	Right-handed alpha
Helix 92	AK2	D	1117	1145	Right-handed alpha
Helix 93	AK3	D	1150	1160	Right-handed alpha
Helix 94	AK4	D	1183	1193	Right-handed alpha
Helix 95	AK5	D	1209	1216	Right-handed alpha
Helix 96	AK6	D	1219	1225	Right-handed alpha
Helix 97	AK7	D	1228	1239	Right-handed alpha
Helix 98	AK8	D	1247	1255	Right-handed alpha
Helix 99	AK9	D	1260	1263	Right-handed 310
Helix 100	AL1	D	1264	1269	Right-handed alpha
Helix 101	AL2	E	33	37	Right-handed 310
Helix 102	AL3	E	39	45	Right-handed alpha
Helix 103	AL4	E	49	74	Right-handed alpha
Helix 104	AL5	E	90	101	Right-handed alpha
Helix 105	AL6	F	209	222	Right-handed alpha
Helix 106	AL7	F	226	236	Right-handed alpha
Helix 107	AL8	F	242	270	Right-handed alpha
Helix 108	AL9	F	274	299	Right-handed alpha
Helix 109	AM1	F	299	308	Right-handed alpha
Helix 110	AM2	F	309	311	Right-handed 310
Helix 111	AM3	F	316	334	Right-handed alpha
Helix 112	AM4	F	342	363	Right-handed alpha
Helix 113	AM5	F	369	391	Right-handed alpha
Helix 114	AM6	F	395	404	Right-handed alpha
Helix 115	AM7	F	406	417	Right-handed alpha
Helix 116	AM8	F	434	438	Right-handed 310
Helix 117	AM9	F	446	461	Right-handed alpha
Helix 118	AN1	F	470	479	Right-handed alpha
Helix 119	AN2	F	488	496	Right-handed alpha
Helix 120	AN3	F	501	512	Right-handed alpha
Helix 121	AN4	F	514	520	Right-handed alpha
Helix 122	AN5	F	524	528	Right-handed 310

There are 42 sheets in PDB entry 5UHD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	189	198	anti-parallel
Strand 4	A	171	181	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	99	first strand
Strand 2	A	134	144	anti-parallel
Strand 3	A	47	56	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	116	118	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	124	126	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	166	167	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	190	198	anti-parallel
Strand 4	B	171	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	100	first strand
Strand 2	B	133	144	anti-parallel
Strand 3	B	47	56	anti-parallel
Strand 4	B	161	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	116	118	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	972	973	parallel
Strand 3	C	626	627	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	130	141	anti-parallel
Strand 4	C	147	158	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	437	439	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	177	181	anti-parallel
Strand 3	C	454	456	parallel
Strand 4	C	497	499	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	191	first strand
Strand 2	C	198	205	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	216	first strand
Strand 2	C	222	225	anti-parallel
Strand 3	C	232	233	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	356	first strand
Strand 2	C	362	364	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	519	anti-parallel
Strand 3	C	524	531	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	519	anti-parallel
Strand 3	C	578	580	anti-parallel
Strand 4	C	541	542	parallel
Strand 5	C	558	562	anti-parallel
Strand 6	C	568	572	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	643	first strand
Strand 2	C	701	704	anti-parallel
Strand 3	C	687	688	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	671	first strand
Strand 2	C	657	662	anti-parallel
Strand 3	C	648	653	anti-parallel
Strand 4	C	695	696	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	676	677	first strand
Strand 2	C	683	684	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	885	886	first strand
Strand 2	C	1023	1032	anti-parallel
Strand 3	C	717	723	anti-parallel
Strand 4	C	915	917	parallel
Strand 5	C	735	738	anti-parallel
Strand 6	C	895	899	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	885	886	first strand
Strand 2	C	1023	1032	anti-parallel
Strand 3	C	1007	1008	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	765	766	first strand
Strand 2	C	749	762	anti-parallel
Strand 3	C	865	877	anti-parallel
Strand 4	C	845	854	anti-parallel
Strand 5	C	795	796	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	768	769	first strand
Strand 2	C	805	808	anti-parallel
Strand 3	C	832	834	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	801	803	first strand
Strand 2	C	837	838	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	944	945	first strand
Strand 2	C	965	966	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel
Strand 7	D	522	524	anti-parallel
Strand 8	D	425	432	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1067	1068	first strand
Strand 2	D	420	421	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1133	1138	first strand
Strand 2	D	9	14	anti-parallel
Strand 3	D	1242	1244	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	102	first strand
Strand 2	D	313	319	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	335	337	anti-parallel
Strand 3	F	421	422	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	632	637	parallel
Strand 3	D	662	667	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	886	888	first strand
Strand 2	D	974	975	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	897	900	first strand
Strand 2	D	959	963	anti-parallel
Strand 3	D	924	925	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	902	904	first strand
Strand 2	D	910	912	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	929	930	first strand
Strand 2	D	936	938	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	981	982	first strand
Strand 2	D	987	988	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1075	1079	first strand
Strand 2	D	1062	1068	anti-parallel
Strand 3	D	1051	1055	anti-parallel
Strand 4	D	1104	1105	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1181	1182	first strand
Strand 2	D	1164	1167	anti-parallel
Strand 3	D	1203	1205	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1272	1274	first strand
Strand 2	E	104	106	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UHD

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UHD