Analysis of interatomic Contacts of Structural Units in PDB entry:
5UHU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UHU entry

There is 1 chain in PDB entry 5UHU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5TRP 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 5UHU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 30Right-handed alpha
Helix 2
AA2
A
48 56Right-handed alpha
Helix 3
AA3
A
63 69Right-handed 310
Helix 4
AA4
A
82 86Right-handed 310
Helix 5
AA5
A
89 102Right-handed alpha
Helix 6
AA6
A
103 109Right-handed alpha
Helix 7
AA7
A
110 129Right-handed alpha
Helix 8
AA8
A
134 138Right-handed alpha
Helix 9
AA9
A
141 151Right-handed alpha
Helix 10
AB1
A
154 169Right-handed alpha
Helix 11
AB2
A
175 200Right-handed alpha
Helix 12
AB3
A
204 210Right-handed alpha
Helix 13
AB4
A
220 253Right-handed alpha
Helix 14
AB5
A
253 263Right-handed alpha
Helix 15
AB6
A
266 278Right-handed alpha
Helix 16
AB7
A
310 315Right-handed alpha
Helix 17
AB8
A
348 367Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5UHU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
32 36parallel
Strand 3
A
43 46anti-parallel
Strand 4
A
305 309parallel
Strand 5
A
285 290anti-parallel
Strand 6
A
61 62anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
394 396anti-parallel
Strand 3
A
371 372anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
299 301anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 341first strand
Strand 2
A
344 345anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il