Analysis of interatomic Contacts of Structural Units in PDB entry:
5UI1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UI1 entry

There are 4 chains in PDB entry 5UI1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 178	TYR 489
B	GLY 178	ALA 490
C	TYR 176	THR 492
D	PRO 179	TYR 489

There are 48 helices in PDB entry 5UI1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	187	200	Right-handed alpha
Helix 2	AA2	A	205	222	Right-handed alpha
Helix 3	AA3	A	246	258	Right-handed alpha
Helix 4	AA4	A	278	293	Right-handed alpha
Helix 5	AA5	A	306	314	Right-handed alpha
Helix 6	AA6	A	314	323	Right-handed alpha
Helix 7	AA7	A	324	336	Right-handed alpha
Helix 8	AA8	A	362	369	Right-handed alpha
Helix 9	AA9	A	379	387	Right-handed alpha
Helix 10	AB1	A	407	418	Right-handed alpha
Helix 11	AB2	A	438	440	Right-handed 310
Helix 12	AB3	A	450	454	Right-handed 310
Helix 13	AB4	B	187	200	Right-handed alpha
Helix 14	AB5	B	205	222	Right-handed alpha
Helix 15	AB6	B	246	258	Right-handed alpha
Helix 16	AB7	B	278	293	Right-handed alpha
Helix 17	AB8	B	306	314	Right-handed alpha
Helix 18	AB9	B	314	323	Right-handed alpha
Helix 19	AC1	B	324	337	Right-handed alpha
Helix 20	AC2	B	362	368	Right-handed alpha
Helix 21	AC3	B	379	387	Right-handed alpha
Helix 22	AC4	B	407	418	Right-handed alpha
Helix 23	AC5	B	450	454	Right-handed 310
Helix 24	AC6	C	181	185	Right-handed 310
Helix 25	AC7	C	187	200	Right-handed alpha
Helix 26	AC8	C	205	222	Right-handed alpha
Helix 27	AC9	C	246	258	Right-handed alpha
Helix 28	AD1	C	278	293	Right-handed alpha
Helix 29	AD2	C	306	314	Right-handed alpha
Helix 30	AD3	C	314	323	Right-handed alpha
Helix 31	AD4	C	324	336	Right-handed alpha
Helix 32	AD5	C	362	368	Right-handed alpha
Helix 33	AD6	C	379	387	Right-handed alpha
Helix 34	AD7	C	407	418	Right-handed alpha
Helix 35	AD8	C	450	454	Right-handed 310
Helix 36	AD9	D	181	185	Right-handed 310
Helix 37	AE1	D	187	200	Right-handed alpha
Helix 38	AE2	D	205	222	Right-handed alpha
Helix 39	AE3	D	246	258	Right-handed alpha
Helix 40	AE4	D	278	293	Right-handed alpha
Helix 41	AE5	D	306	313	Right-handed alpha
Helix 42	AE6	D	314	323	Right-handed alpha
Helix 43	AE7	D	324	336	Right-handed alpha
Helix 44	AE8	D	362	369	Right-handed alpha
Helix 45	AE9	D	379	387	Right-handed alpha
Helix 46	AF1	D	407	419	Right-handed alpha
Helix 47	AF2	D	438	440	Right-handed 310
Helix 48	AF3	D	450	454	Right-handed 310

There are 12 sheets in PDB entry 5UI1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	229	first strand
Strand 2	A	341	344	parallel
Strand 3	A	348	351	anti-parallel
Strand 4	A	422	425	parallel
Strand 5	A	442	445	parallel
Strand 6	A	434	437	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	300	first strand
Strand 2	A	266	269	parallel
Strand 3	A	236	240	parallel
Strand 4	A	459	465	anti-parallel
Strand 5	A	472	476	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	389	first strand
Strand 2	A	404	406	parallel
Strand 3	A	395	397	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	229	first strand
Strand 2	B	341	344	parallel
Strand 3	B	348	351	anti-parallel
Strand 4	B	422	425	parallel
Strand 5	B	442	445	parallel
Strand 6	B	434	437	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	300	first strand
Strand 2	B	266	269	parallel
Strand 3	B	236	240	parallel
Strand 4	B	459	465	anti-parallel
Strand 5	B	472	476	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	389	first strand
Strand 2	B	404	406	parallel
Strand 3	B	395	397	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	229	first strand
Strand 2	C	341	344	parallel
Strand 3	C	348	351	anti-parallel
Strand 4	C	422	425	parallel
Strand 5	C	442	445	parallel
Strand 6	C	434	437	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	300	first strand
Strand 2	C	266	269	parallel
Strand 3	C	236	240	parallel
Strand 4	C	459	465	anti-parallel
Strand 5	C	471	476	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	389	first strand
Strand 2	C	404	406	parallel
Strand 3	C	395	397	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	229	first strand
Strand 2	D	341	344	parallel
Strand 3	D	348	351	anti-parallel
Strand 4	D	422	425	parallel
Strand 5	D	442	445	parallel
Strand 6	D	434	437	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	300	first strand
Strand 2	D	266	269	parallel
Strand 3	D	236	240	parallel
Strand 4	D	459	465	anti-parallel
Strand 5	D	468	476	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	388	389	first strand
Strand 2	D	404	406	parallel
Strand 3	D	395	397	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UI1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UI1