Analysis of interatomic Contacts of Structural Units in PDB entry:
5UI3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UI3 entry

There are 4 chains in PDB entry 5UI3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	SER 18	GLY 322
A	SER 18	GLY 322
B	SER 18	GLY 322
C	SER 18	ARG 323

There are 72 helices in PDB entry 5UI3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	18	25	Right-handed alpha
Helix 2	AA2	D	43	57	Right-handed alpha
Helix 3	AA3	D	70	74	Right-handed 310
Helix 4	AA4	D	75	91	Right-handed alpha
Helix 5	AA5	D	104	118	Right-handed alpha
Helix 6	AA6	D	134	147	Right-handed alpha
Helix 7	AA7	D	156	161	Right-handed alpha
Helix 8	AA8	D	165	173	Right-handed alpha
Helix 9	AA9	D	186	196	Right-handed alpha
Helix 10	AB1	D	204	215	Right-handed alpha
Helix 11	AB2	D	223	227	Right-handed 310
Helix 12	AB3	D	228	237	Right-handed alpha
Helix 13	AB4	D	241	248	Right-handed alpha
Helix 14	AB5	D	248	255	Right-handed alpha
Helix 15	AB6	D	261	271	Right-handed alpha
Helix 16	AB7	D	286	300	Right-handed alpha
Helix 17	AB8	D	301	304	Right-handed 310
Helix 18	AB9	D	314	318	Right-handed 310
Helix 19	AC1	A	19	25	Right-handed alpha
Helix 20	AC2	A	43	57	Right-handed alpha
Helix 21	AC3	A	70	74	Right-handed 310
Helix 22	AC4	A	75	91	Right-handed alpha
Helix 23	AC5	A	104	118	Right-handed alpha
Helix 24	AC6	A	134	147	Right-handed alpha
Helix 25	AC7	A	156	161	Right-handed alpha
Helix 26	AC8	A	165	173	Right-handed alpha
Helix 27	AC9	A	186	196	Right-handed alpha
Helix 28	AD1	A	204	215	Right-handed alpha
Helix 29	AD2	A	223	227	Right-handed 310
Helix 30	AD3	A	228	237	Right-handed alpha
Helix 31	AD4	A	241	248	Right-handed alpha
Helix 32	AD5	A	248	255	Right-handed alpha
Helix 33	AD6	A	261	271	Right-handed alpha
Helix 34	AD7	A	286	300	Right-handed alpha
Helix 35	AD8	A	301	304	Right-handed 310
Helix 36	AD9	A	314	318	Right-handed 310
Helix 37	AE1	B	19	25	Right-handed alpha
Helix 38	AE2	B	43	57	Right-handed alpha
Helix 39	AE3	B	70	74	Right-handed 310
Helix 40	AE4	B	75	91	Right-handed alpha
Helix 41	AE5	B	104	118	Right-handed alpha
Helix 42	AE6	B	134	147	Right-handed alpha
Helix 43	AE7	B	156	161	Right-handed alpha
Helix 44	AE8	B	165	173	Right-handed alpha
Helix 45	AE9	B	186	196	Right-handed alpha
Helix 46	AF1	B	204	215	Right-handed alpha
Helix 47	AF2	B	223	227	Right-handed 310
Helix 48	AF3	B	228	237	Right-handed alpha
Helix 49	AF4	B	241	248	Right-handed alpha
Helix 50	AF5	B	248	255	Right-handed alpha
Helix 51	AF6	B	261	271	Right-handed alpha
Helix 52	AF7	B	286	300	Right-handed alpha
Helix 53	AF8	B	301	304	Right-handed 310
Helix 54	AF9	B	314	318	Right-handed 310
Helix 55	AG1	C	19	25	Right-handed alpha
Helix 56	AG2	C	43	57	Right-handed alpha
Helix 57	AG3	C	70	74	Right-handed 310
Helix 58	AG4	C	75	91	Right-handed alpha
Helix 59	AG5	C	104	118	Right-handed alpha
Helix 60	AG6	C	134	147	Right-handed alpha
Helix 61	AG7	C	156	161	Right-handed alpha
Helix 62	AG8	C	165	173	Right-handed alpha
Helix 63	AG9	C	186	196	Right-handed alpha
Helix 64	AH1	C	204	215	Right-handed alpha
Helix 65	AH2	C	223	227	Right-handed 310
Helix 66	AH3	C	228	237	Right-handed alpha
Helix 67	AH4	C	241	248	Right-handed alpha
Helix 68	AH5	C	248	255	Right-handed alpha
Helix 69	AH6	C	261	271	Right-handed alpha
Helix 70	AH7	C	286	300	Right-handed alpha
Helix 71	AH8	C	301	304	Right-handed 310
Helix 72	AH9	C	314	318	Right-handed 310

There are 8 sheets in PDB entry 5UI3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	31	first strand
Strand 2	D	61	64	parallel
Strand 3	D	95	99	parallel
Strand 4	D	122	126	parallel
Strand 5	D	151	155	parallel
Strand 6	D	178	183	parallel
Strand 7	D	200	202	parallel
Strand 8	D	219	222	parallel
Strand 9	D	28	31	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	279	first strand
Strand 2	D	319	321	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	61	64	parallel
Strand 3	A	95	99	parallel
Strand 4	A	122	126	parallel
Strand 5	A	151	155	parallel
Strand 6	A	178	183	parallel
Strand 7	A	200	202	parallel
Strand 8	A	219	222	parallel
Strand 9	A	28	31	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	279	first strand
Strand 2	A	319	321	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	61	64	parallel
Strand 3	B	95	99	parallel
Strand 4	B	122	126	parallel
Strand 5	B	151	155	parallel
Strand 6	B	178	183	parallel
Strand 7	B	200	202	parallel
Strand 8	B	219	222	parallel
Strand 9	B	28	31	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	279	first strand
Strand 2	B	319	321	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	61	64	parallel
Strand 3	C	95	99	parallel
Strand 4	C	122	126	parallel
Strand 5	C	151	155	parallel
Strand 6	C	178	183	parallel
Strand 7	C	200	202	parallel
Strand 8	C	219	222	parallel
Strand 9	C	28	31	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	279	first strand
Strand 2	C	319	321	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UI3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UI3