Analysis of interatomic Contacts of Structural Units in PDB entry:
5UI4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UI4 entry

There are 6 chains in PDB entry 5UI4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	TYR 151
B	ASN 3	GLU 152
C	ASN 3	TYR 151
D	ASN 3	GLU 152
E	ASN 3	TYR 151
F	ASN 3	TYR 151

There are 66 helices in PDB entry 5UI4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	18	Right-handed alpha
Helix 2	AA2	A	20	32	Right-handed alpha
Helix 3	AA3	A	44	52	Right-handed alpha
Helix 4	AA4	A	53	56	Right-handed 310
Helix 5	AA5	A	60	70	Right-handed alpha
Helix 6	AA6	A	82	92	Right-handed alpha
Helix 7	AA7	A	103	109	Right-handed alpha
Helix 8	AA8	A	111	115	Right-handed 310
Helix 9	AA9	A	122	134	Right-handed alpha
Helix 10	AB1	A	135	139	Right-handed 310
Helix 11	AB2	A	146	151	Right-handed alpha
Helix 12	AB3	B	12	18	Right-handed alpha
Helix 13	AB4	B	20	32	Right-handed alpha
Helix 14	AB5	B	44	52	Right-handed alpha
Helix 15	AB6	B	53	56	Right-handed 310
Helix 16	AB7	B	60	71	Right-handed alpha
Helix 17	AB8	B	82	92	Right-handed alpha
Helix 18	AB9	B	103	109	Right-handed alpha
Helix 19	AC1	B	111	115	Right-handed 310
Helix 20	AC2	B	122	134	Right-handed alpha
Helix 21	AC3	B	135	139	Right-handed 310
Helix 22	AC4	B	146	151	Right-handed alpha
Helix 23	AC5	C	12	18	Right-handed alpha
Helix 24	AC6	C	20	32	Right-handed alpha
Helix 25	AC7	C	44	52	Right-handed alpha
Helix 26	AC8	C	53	56	Right-handed 310
Helix 27	AC9	C	60	70	Right-handed alpha
Helix 28	AD1	C	82	92	Right-handed alpha
Helix 29	AD2	C	103	109	Right-handed alpha
Helix 30	AD3	C	111	115	Right-handed 310
Helix 31	AD4	C	122	134	Right-handed alpha
Helix 32	AD5	C	135	139	Right-handed 310
Helix 33	AD6	C	146	151	Right-handed alpha
Helix 34	AD7	D	12	18	Right-handed alpha
Helix 35	AD8	D	20	32	Right-handed alpha
Helix 36	AD9	D	44	52	Right-handed alpha
Helix 37	AE1	D	53	56	Right-handed 310
Helix 38	AE2	D	60	71	Right-handed alpha
Helix 39	AE3	D	82	92	Right-handed alpha
Helix 40	AE4	D	103	109	Right-handed alpha
Helix 41	AE5	D	111	115	Right-handed 310
Helix 42	AE6	D	122	134	Right-handed alpha
Helix 43	AE7	D	135	139	Right-handed 310
Helix 44	AE8	D	146	151	Right-handed alpha
Helix 45	AE9	E	12	18	Right-handed alpha
Helix 46	AF1	E	20	32	Right-handed alpha
Helix 47	AF2	E	44	52	Right-handed alpha
Helix 48	AF3	E	53	56	Right-handed 310
Helix 49	AF4	E	60	71	Right-handed alpha
Helix 50	AF5	E	82	92	Right-handed alpha
Helix 51	AF6	E	103	109	Right-handed alpha
Helix 52	AF7	E	111	115	Right-handed 310
Helix 53	AF8	E	122	134	Right-handed alpha
Helix 54	AF9	E	135	139	Right-handed 310
Helix 55	AG1	E	146	151	Right-handed alpha
Helix 56	AG2	F	12	18	Right-handed alpha
Helix 57	AG3	F	20	32	Right-handed alpha
Helix 58	AG4	F	44	52	Right-handed alpha
Helix 59	AG5	F	53	56	Right-handed 310
Helix 60	AG6	F	60	71	Right-handed alpha
Helix 61	AG7	F	82	92	Right-handed alpha
Helix 62	AG8	F	103	109	Right-handed alpha
Helix 63	AG9	F	111	115	Right-handed 310
Helix 64	AH1	F	122	134	Right-handed alpha
Helix 65	AH2	F	135	139	Right-handed 310
Helix 66	AH3	F	146	151	Right-handed alpha

There are 6 sheets in PDB entry 5UI4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	41	first strand
Strand 2	A	73	79	anti-parallel
Strand 3	A	6	11	anti-parallel
Strand 4	A	117	119	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	41	first strand
Strand 2	B	73	79	anti-parallel
Strand 3	B	6	11	anti-parallel
Strand 4	B	117	119	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	41	first strand
Strand 2	C	73	79	anti-parallel
Strand 3	C	6	11	anti-parallel
Strand 4	C	117	119	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	41	first strand
Strand 2	D	73	79	anti-parallel
Strand 3	D	6	11	anti-parallel
Strand 4	D	117	119	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	41	first strand
Strand 2	E	73	79	anti-parallel
Strand 3	E	6	11	anti-parallel
Strand 4	E	117	119	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	41	first strand
Strand 2	F	73	79	anti-parallel
Strand 3	F	6	11	anti-parallel
Strand 4	F	117	119	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UI4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UI4