Analysis of interatomic Contacts of Structural Units in PDB entry:
5UI8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UI8 entry

There are 6 chains in PDB entry 5UI8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	THR 6	ALA 327
H	THR 6	LEU 234
I	VAL 2	ASP 1341
J	MET 1	ARG 1372
K	ALA 2	LEU 80
M	GLN 20	LYS 474

There are125 helices in PDB entry 5UI8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	34	50	Right-handed alpha
Helix 2	AA2	G	77	86	Right-handed alpha
Helix 3	AA3	G	113	115	Right-handed 310
Helix 4	AA4	G	156	160	Right-handed 310
Helix 5	AA5	G	212	233	Right-handed alpha
Helix 6	AA6	G	256	261	Right-handed 310
Helix 7	AA7	G	265	273	Right-handed alpha
Helix 8	AA8	G	278	283	Right-handed alpha
Helix 9	AA9	G	285	291	Right-handed alpha
Helix 10	AB1	G	295	310	Right-handed alpha
Helix 11	AB2	H	34	49	Right-handed alpha
Helix 12	AB3	H	77	87	Right-handed alpha
Helix 13	AB4	H	212	228	Right-handed alpha
Helix 14	AB5	I	28	39	Right-handed alpha
Helix 15	AB6	I	48	57	Right-handed alpha
Helix 16	AB7	I	81	89	Right-handed alpha
Helix 17	AB8	I	206	211	Right-handed alpha
Helix 18	AB9	I	212	214	Right-handed 310
Helix 19	AC1	I	216	218	Right-handed 310
Helix 20	AC2	I	219	224	Right-handed alpha
Helix 21	AC3	I	345	351	Right-handed alpha
Helix 22	AC4	I	352	354	Right-handed 310
Helix 23	AC5	I	358	371	Right-handed alpha
Helix 24	AC6	I	378	387	Right-handed alpha
Helix 25	AC7	I	397	409	Right-handed alpha
Helix 26	AC8	I	421	437	Right-handed alpha
Helix 27	AC9	I	447	449	Right-handed 310
Helix 28	AD1	I	455	482	Right-handed alpha
Helix 29	AD2	I	495	507	Right-handed alpha
Helix 30	AD3	I	519	528	Right-handed alpha
Helix 31	AD4	I	544	549	Right-handed alpha
Helix 32	AD5	I	551	555	Right-handed 310
Helix 33	AD6	I	607	614	Right-handed alpha
Helix 34	AD7	I	656	661	Right-handed 310
Helix 35	AD8	I	662	667	Right-handed alpha
Helix 36	AD9	I	670	674	Right-handed 310
Helix 37	AE1	I	675	687	Right-handed alpha
Helix 38	AE2	I	704	710	Right-handed alpha
Helix 39	AE3	I	820	826	Right-handed alpha
Helix 40	AE4	I	858	864	Right-handed alpha
Helix 41	AE5	I	895	906	Right-handed alpha
Helix 42	AE6	I	943	961	Right-handed alpha
Helix 43	AE7	I	961	982	Right-handed alpha
Helix 44	AE8	I	986	992	Right-handed alpha
Helix 45	AE9	I	1011	1039	Right-handed alpha
Helix 46	AF1	I	1101	1107	Right-handed alpha
Helix 47	AF2	I	1109	1134	Right-handed alpha
Helix 48	AF3	I	1137	1149	Right-handed alpha
Helix 49	AF4	I	1169	1175	Right-handed alpha
Helix 50	AF5	I	1191	1200	Right-handed alpha
Helix 51	AF6	I	1238	1243	Right-handed alpha
Helix 52	AF7	I	1271	1281	Right-handed alpha
Helix 53	AF8	I	1284	1292	Right-handed alpha
Helix 54	AF9	I	1297	1309	Right-handed alpha
Helix 55	AG1	I	1320	1332	Right-handed alpha
Helix 56	AG2	J	2	12	Right-handed alpha
Helix 57	AG3	J	13	15	Right-handed 310
Helix 58	AG4	J	26	33	Right-handed alpha
Helix 59	AG5	J	94	100	Right-handed 310
Helix 60	AG6	J	113	119	Right-handed alpha
Helix 61	AG7	J	131	140	Right-handed alpha
Helix 62	AG8	J	161	172	Right-handed alpha
Helix 63	AG9	J	181	192	Right-handed alpha
Helix 64	AH1	J	194	208	Right-handed alpha
Helix 65	AH2	J	210	231	Right-handed alpha
Helix 66	AH3	J	233	236	Right-handed 310
Helix 67	AH4	J	246	250	Right-handed 310
Helix 68	AH5	J	265	285	Right-handed alpha
Helix 69	AH6	J	288	308	Right-handed alpha
Helix 70	AH7	J	327	331	Right-handed 310
Helix 71	AH8	J	336	340	Right-handed 310
Helix 72	AH9	J	370	377	Right-handed alpha
Helix 73	AI1	J	377	388	Right-handed alpha
Helix 74	AI2	J	393	404	Right-handed alpha
Helix 75	AI3	J	405	416	Right-handed alpha
Helix 76	AI4	J	430	434	Right-handed 310
Helix 77	AI5	J	453	458	Right-handed alpha
Helix 78	AI6	J	473	483	Right-handed alpha
Helix 79	AI7	J	504	514	Right-handed alpha
Helix 80	AI8	J	529	538	Right-handed alpha
Helix 81	AI9	J	574	580	Right-handed alpha
Helix 82	AJ1	J	581	583	Right-handed 310
Helix 83	AJ2	J	588	592	Right-handed 310
Helix 84	AJ3	J	599	613	Right-handed alpha
Helix 85	AJ4	J	613	635	Right-handed alpha
Helix 86	AJ5	J	649	671	Right-handed alpha
Helix 87	AJ6	J	674	701	Right-handed alpha
Helix 88	AJ7	J	720	728	Right-handed alpha
Helix 89	AJ8	J	733	742	Right-handed alpha
Helix 90	AJ9	J	768	804	Right-handed alpha
Helix 91	AK1	J	865	875	Right-handed alpha
Helix 92	AK2	J	896	900	Right-handed alpha
Helix 93	AK3	J	914	925	Right-handed alpha
Helix 94	AK4	J	926	928	Right-handed 310
Helix 95	AK5	J	1137	1146	Right-handed alpha
Helix 96	AK6	J	1216	1223	Right-handed alpha
Helix 97	AK7	J	1225	1244	Right-handed alpha
Helix 98	AK8	J	1249	1260	Right-handed alpha
Helix 99	AK9	J	1280	1292	Right-handed alpha
Helix 100	AL1	J	1308	1314	Right-handed alpha
Helix 101	AL2	J	1320	1324	Right-handed 310
Helix 102	AL3	J	1327	1339	Right-handed alpha
Helix 103	AL4	J	1346	1353	Right-handed alpha
Helix 104	AL5	J	1362	1370	Right-handed alpha
Helix 105	AL6	K	6	11	Right-handed alpha
Helix 106	AL7	K	17	32	Right-handed alpha
Helix 107	AL8	K	45	56	Right-handed alpha
Helix 108	AL9	K	60	77	Right-handed alpha
Helix 109	AM1	M	21	28	Right-handed alpha
Helix 110	AM2	M	29	44	Right-handed alpha
Helix 111	AM3	M	121	131	Right-handed alpha
Helix 112	AM4	M	135	148	Right-handed alpha
Helix 113	AM5	M	157	166	Right-handed alpha
Helix 114	AM6	M	172	185	Right-handed alpha
Helix 115	AM7	M	195	207	Right-handed alpha
Helix 116	AM8	M	212	222	Right-handed alpha
Helix 117	AM9	M	223	227	Right-handed 310
Helix 118	AN1	M	234	240	Right-handed alpha
Helix 119	AN2	M	242	254	Right-handed alpha
Helix 120	AN3	M	315	357	Right-handed alpha
Helix 121	AN4	M	366	374	Right-handed alpha
Helix 122	AN5	M	377	388	Right-handed alpha
Helix 123	AN6	M	417	430	Right-handed alpha
Helix 124	AN7	M	438	450	Right-handed alpha
Helix 125	AN8	M	454	465	Right-handed alpha

There are 46 sheets in PDB entry 5UI8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	18	first strand
Strand 2	G	24	31	anti-parallel
Strand 3	G	198	203	anti-parallel
Strand 4	G	185	190	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	99	first strand
Strand 2	G	143	149	anti-parallel
Strand 3	G	53	60	anti-parallel
Strand 4	G	171	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	111	first strand
Strand 2	G	129	133	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	180	182	first strand
Strand 2	G	206	207	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	19	first strand
Strand 2	H	23	28	anti-parallel
Strand 3	H	198	206	anti-parallel
Strand 4	H	184	190	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	59	first strand
Strand 2	H	140	149	anti-parallel
Strand 3	H	98	104	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	92	first strand
Strand 2	H	121	123	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	110	111	first strand
Strand 2	H	129	131	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	13	14	first strand
Strand 2	I	1182	1183	parallel
Strand 3	I	700	701	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	68	70	first strand
Strand 2	I	100	105	anti-parallel
Strand 3	I	113	117	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	93	98	first strand
Strand 2	I	122	128	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	137	first strand
Strand 2	I	142	145	anti-parallel
Strand 3	I	512	514	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	148	151	first strand
Strand 2	I	451	454	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	158	first strand
Strand 2	I	173	177	anti-parallel
Strand 3	I	184	188	anti-parallel
Strand 4	I	194	198	anti-parallel
Strand 5	I	204	205	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	595	anti-parallel
Strand 3	I	598	606	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	595	anti-parallel
Strand 3	I	652	654	anti-parallel
Strand 4	I	616	617	parallel
Strand 5	I	633	637	anti-parallel
Strand 6	I	643	646	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	623	624	first strand
Strand 2	I	628	629	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	724	727	first strand
Strand 2	I	731	735	anti-parallel
Strand 3	I	748	752	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	768	769	first strand
Strand 2	I	784	785	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	789	790	first strand
Strand 2	I	793	794	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1066	1067	first strand
Strand 2	I	1225	1234	anti-parallel
Strand 3	I	798	804	anti-parallel
Strand 4	I	1096	1098	parallel
Strand 5	I	815	819	anti-parallel
Strand 6	I	1075	1080	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1066	1067	first strand
Strand 2	I	1225	1234	anti-parallel
Strand 3	I	1209	1210	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	830	839	first strand
Strand 2	I	1048	1058	anti-parallel
Strand 3	I	925	935	anti-parallel
Strand 4	I	877	878	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	882	884	first strand
Strand 2	I	918	919	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	887	888	first strand
Strand 2	I	914	915	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1335	1340	first strand
Strand 2	J	18	24	anti-parallel
Strand 3	J	1341	1342	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	37	first strand
Strand 2	J	102	112	parallel
Strand 3	J	238	244	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	145	146	first strand
Strand 2	J	178	179	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	315	316	first strand
Strand 2	M	53	54	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	447	449	first strand
Strand 2	J	350	357	parallel
Strand 3	J	465	469	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	365	369	first strand
Strand 2	J	438	442	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	526	527	first strand
Strand 2	J	547	552	parallel
Strand 3	J	568	573	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	705	707	first strand
Strand 2	J	714	716	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	809	811	first strand
Strand 2	J	894	895	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	820	822	first strand
Strand 2	J	880	882	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	951	952	first strand
Strand 2	J	1015	1016	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	957	961	first strand
Strand 2	J	981	985	anti-parallel
Strand 3	J	991	996	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	965	967	first strand
Strand 2	J	973	975	anti-parallel
Strand 3	J	1002	1003	anti-parallel
Strand 4	J	1018	1019	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1025	1026	first strand
Strand 2	J	1122	1124	anti-parallel
Strand 3	J	1106	1107	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1098	1100	first strand
Strand 2	J	1077	1081	anti-parallel
Strand 3	J	1033	1038	anti-parallel
Strand 4	J	1114	1115	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1046	1049	first strand
Strand 2	J	1058	1061	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1089	1090	first strand
Strand 2	J	1093	1096	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1187	1190	first strand
Strand 2	J	1173	1178	anti-parallel
Strand 3	J	1161	1163	anti-parallel
Strand 4	J	1203	1204	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1277	1279	first strand
Strand 2	J	1263	1266	anti-parallel
Strand 3	J	1302	1304	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	47	48	first strand
Strand 2	M	297	298	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	390	391	first strand
Strand 2	M	396	397	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UI8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UI8