Analysis of interatomic Contacts of Structural Units in PDB entry:
5UIB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UIB entry

There are 2 chains in PDB entry 5UIB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4LEU 345
B
 THR 4LEU 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 5UIB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 27Right-handed alpha
Helix 2
AA2
A
39 50Right-handed alpha
Helix 3
AA3
A
58 66Right-handed alpha
Helix 4
AA4
A
76 90Right-handed alpha
Helix 5
AA5
A
103 117Right-handed alpha
Helix 6
AA6
A
126 129Right-handed 310
Helix 7
AA7
A
130 143Right-handed alpha
Helix 8
AA8
A
165 170Right-handed 310
Helix 9
AA9
A
174 179Right-handed alpha
Helix 10
AB1
A
179 192Right-handed alpha
Helix 11
AB2
A
288 309Right-handed alpha
Helix 12
AB3
A
315 336Right-handed alpha
Helix 13
AB4
A
341 345Right-handed alpha
Helix 14
AB5
B
16 27Right-handed alpha
Helix 15
AB6
B
39 50Right-handed alpha
Helix 16
AB7
B
58 66Right-handed alpha
Helix 17
AB8
B
76 78Right-handed 310
Helix 18
AB9
B
79 90Right-handed alpha
Helix 19
AC1
B
103 118Right-handed alpha
Helix 20
AC2
B
126 129Right-handed 310
Helix 21
AC3
B
130 143Right-handed alpha
Helix 22
AC4
B
166 171Right-handed alpha
Helix 23
AC5
B
174 179Right-handed alpha
Helix 24
AC6
B
179 192Right-handed alpha
Helix 25
AC7
B
288 309Right-handed alpha
Helix 26
AC8
B
315 336Right-handed alpha
Helix 27
AC9
B
341 345Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5UIB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
30 36parallel
Strand 3
A
6 11parallel
Strand 4
A
70 73parallel
Strand 5
A
94 96parallel
Strand 6
A
121 123parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 275first strand
Strand 2
A
262 266anti-parallel
Strand 3
A
253 258anti-parallel
Strand 4
A
245 250anti-parallel
Strand 5
A
148 156anti-parallel
Strand 6
A
225 231parallel
Strand 7
A
213 220anti-parallel
Strand 8
A
194 202anti-parallel
Strand 9
A
339 340anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 56first strand
Strand 2
B
30 36parallel
Strand 3
B
6 11parallel
Strand 4
B
70 73parallel
Strand 5
B
94 97parallel
Strand 6
B
121 124parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 275first strand
Strand 2
B
262 267anti-parallel
Strand 3
B
254 258anti-parallel
Strand 4
B
245 250anti-parallel
Strand 5
B
148 156anti-parallel
Strand 6
B
225 231parallel
Strand 7
B
213 220anti-parallel
Strand 8
B
194 202anti-parallel
Strand 9
B
339 340anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il