Analysis of interatomic Contacts of Structural Units in PDB entry:
5UID

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UID entry

There are 8 chains in PDB entry 5UID (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	MSE 183
A	ILE 185	THR 381
B	GLY 2	MSE 183
B	ILE 185	THR 381
C	GLY 2	MSE 183
C	ILE 185	THR 381
D	MSE 3	MSE 183
D	ILE 185	GLY 239

There are 57 helices in PDB entry 5UID. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	26	Right-handed alpha
Helix 2	AA2	A	31	46	Right-handed alpha
Helix 3	AA3	A	48	50	Right-handed 310
Helix 4	AA4	A	57	70	Right-handed alpha
Helix 5	AA5	A	84	93	Right-handed alpha
Helix 6	AA6	A	111	117	Right-handed alpha
Helix 7	AA7	A	131	134	Right-handed 310
Helix 8	AA8	A	137	149	Right-handed alpha
Helix 9	AA9	A	198	210	Right-handed alpha
Helix 10	AB1	A	245	278	Right-handed alpha
Helix 11	AB2	A	305	319	Right-handed alpha
Helix 12	AB3	A	329	337	Right-handed 310
Helix 13	AB4	A	342	351	Right-handed alpha
Helix 14	AB5	A	362	381	Right-handed alpha
Helix 15	AB6	B	12	26	Right-handed alpha
Helix 16	AB7	B	31	46	Right-handed alpha
Helix 17	AB8	B	48	50	Right-handed 310
Helix 18	AB9	B	57	70	Right-handed alpha
Helix 19	AC1	B	84	93	Right-handed alpha
Helix 20	AC2	B	111	117	Right-handed alpha
Helix 21	AC3	B	131	134	Right-handed 310
Helix 22	AC4	B	137	148	Right-handed alpha
Helix 23	AC5	B	198	210	Right-handed alpha
Helix 24	AC6	B	245	278	Right-handed alpha
Helix 25	AC7	B	305	319	Right-handed alpha
Helix 26	AC8	B	329	337	Right-handed 310
Helix 27	AC9	B	342	351	Right-handed alpha
Helix 28	AD1	B	362	380	Right-handed alpha
Helix 29	AD2	C	12	26	Right-handed alpha
Helix 30	AD3	C	31	46	Right-handed alpha
Helix 31	AD4	C	48	50	Right-handed 310
Helix 32	AD5	C	57	70	Right-handed alpha
Helix 33	AD6	C	84	93	Right-handed alpha
Helix 34	AD7	C	111	117	Right-handed alpha
Helix 35	AD8	C	131	134	Right-handed 310
Helix 36	AD9	C	137	149	Right-handed alpha
Helix 37	AE1	C	198	210	Right-handed alpha
Helix 38	AE2	C	245	278	Right-handed alpha
Helix 39	AE3	C	305	319	Right-handed alpha
Helix 40	AE4	C	329	337	Right-handed 310
Helix 41	AE5	C	342	351	Right-handed alpha
Helix 42	AE6	C	362	380	Right-handed alpha
Helix 43	AE7	D	12	26	Right-handed alpha
Helix 44	AE8	D	31	46	Right-handed alpha
Helix 45	AE9	D	48	50	Right-handed 310
Helix 46	AF1	D	57	69	Right-handed alpha
Helix 47	AF2	D	84	93	Right-handed alpha
Helix 48	AF3	D	111	118	Right-handed alpha
Helix 49	AF4	D	131	134	Right-handed 310
Helix 50	AF5	D	137	149	Right-handed alpha
Helix 51	AF6	D	157	159	Right-handed 310
Helix 52	AF7	D	198	210	Right-handed alpha
Helix 53	AF8	D	245	278	Right-handed alpha
Helix 54	AF9	D	305	319	Right-handed alpha
Helix 55	AG1	D	329	337	Right-handed 310
Helix 56	AG2	D	342	351	Right-handed alpha
Helix 57	AG3	D	362	381	Right-handed alpha

There are 16 sheets in PDB entry 5UID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	192	196	anti-parallel
Strand 3	A	175	179	anti-parallel
Strand 4	A	152	155	parallel
Strand 5	A	123	129	parallel
Strand 6	A	76	80	parallel
Strand 7	A	97	101	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	163	164	anti-parallel
Strand 3	A	293	294	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	234	235	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	303	first strand
Strand 2	A	352	355	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	55	first strand
Strand 2	B	192	196	anti-parallel
Strand 3	B	175	179	anti-parallel
Strand 4	B	152	155	parallel
Strand 5	B	123	129	parallel
Strand 6	B	76	80	parallel
Strand 7	B	97	101	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	168	first strand
Strand 2	B	163	164	anti-parallel
Strand 3	B	293	294	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	214	first strand
Strand 2	B	234	235	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	303	first strand
Strand 2	B	352	355	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	55	first strand
Strand 2	C	192	196	anti-parallel
Strand 3	C	175	179	anti-parallel
Strand 4	C	152	155	parallel
Strand 5	C	123	129	parallel
Strand 6	C	76	80	parallel
Strand 7	C	97	101	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	163	164	anti-parallel
Strand 3	C	293	294	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	214	first strand
Strand 2	C	234	235	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	303	first strand
Strand 2	C	352	355	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	55	first strand
Strand 2	D	192	196	anti-parallel
Strand 3	D	175	179	anti-parallel
Strand 4	D	152	155	parallel
Strand 5	D	123	129	parallel
Strand 6	D	76	80	parallel
Strand 7	D	97	101	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	168	first strand
Strand 2	D	163	164	anti-parallel
Strand 3	D	293	294	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	214	first strand
Strand 2	D	234	235	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	300	303	first strand
Strand 2	D	352	355	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UID

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UID